Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MKFHTVYVGKNTKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLITDEGNDLTTIARTAIGENLFDLKVNLTDSVIDGTVLTKARKSFEERILNPFIEQRKEAKRIHD |
1 | 5cw9A | 0.11 | 0.11 | 3.84 | 0.74 | SPARKS-K | | MEMDIRFRGFAGTVTVTLIIRFRGDDLEALEKALKEMIRQARKFAGTVTYTLDGNDLEIRTGVPPQVILELVKEAIRLAKEFNITVTVIRITG-------VPEQVRKELAKEAERLAKEFN |
2 | 4efjA2 | 0.13 | 0.12 | 4.00 | 0.67 | FFAS-3D | | --FSVYTTSDDKYVSLSFRVSQHNKDKQLLKSFVDFFGYHNKGNKAVIFVT-----------RKFEDINDKIIP--LFNEYKIKGVKYKDFKDWSKVAKMIETNGYKEICKIKENMNSYRK |
3 | 4cruA | 0.22 | 0.13 | 4.17 | 0.26 | HHpred | | -----------------------------STNLKNSFASALRTA-------------SPQQREMMDQAAAQLAQDN-----CELACCFIQKTAVEKAGPEMD-KRLATEFELRKHARQEGR |
4 | 1w1wB | 0.11 | 0.11 | 3.90 | 0.70 | MUSTER | | AYVKAFYQKGNKLVELMRIISRNGDKIDSYKDYSIFLENENILIKAKLVFQGDVEQIAAQSPVELSRMFEEVSSIQYKKEYEELKEKIKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYR |
5 | 2nupB | 0.11 | 0.08 | 2.98 | 0.56 | CNFpred | | YAVQMSVEE-TQLVSFQSALLYTSS------------------GERRIRVHTLCLPVVS----TLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRS------- |
6 | 2pffB | 0.25 | 0.20 | 6.16 | 0.65 | HHsearch-2 | | MDAEHVLLVPTA--SFFIASQLQDDEPTTPAELVGKFGYVS---SLVEPSKVGEFENCYLEGNDIHALAAKLLQEND--------------T-----TLVKTKELIKNYITARIMAKRPFD |
7 | 5cw9A | 0.10 | 0.10 | 3.64 | 0.74 | Neff-PPAS | | MEMDIRFRGDAGTVTVTLIIRFRGDDLEALEKALKEMIRQARKFAGTVTYTLDGNDLEIRTGVPPQVILELVKEAIRLAKEFNITVTVELVIRITGVP----EQVRKELAKEAERLAKEFN |
8 | 1cidA1 | 0.15 | 0.11 | 3.60 | 0.56 | HHsearch | | -TSITAYKSEGESAEFSFPL-----NLGE------------ESLQGELRWKAEKAPWITQSTSNP-------------KFQL-SETLPLTLQIPQ-V--SLQFAGLTLTLDRGILYQEVN- |
9 | 2lciA | 0.11 | 0.11 | 3.85 | 0.55 | SP3 | | MKILILINTNNDELIKKIKKEVENQGYNDSDELKKEMKKLAEEKNF------EKILIISNDKQLLKEMLELISKLKVFLLLQDQDENELEEFKRKIESQGYDEEALKIVREFMQKAGSLEH |
10 | 5cw9A | 0.11 | 0.11 | 3.90 | 0.58 | PROSPECTOR2 | | MEMDIRFRGDAGTVTVTLIIRFRGDDLEALEKALKEMIRQARKFAGTVTYTLDGNDLEIRTGVPPQVILELVKEAIRLAKEFNITVTVELVIRITGVPEQVRKELAKEAERLAKEFNITVL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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