>PF03062 (336 residues) AGYYYTATGTYDIKWTMPHCVLTLKLIGLAIDYFDGGKDQDSTEPGPTSLIHWVQLLLRV QRSVPNSLSSEQQKYAIRGVPSLLEVAGFSYFYGAFLVGPQFSMNHYMKLVQGQLTDTPG RIPNSTIPALKRLGLGLVYLVGYTLLSPHITEDYFLTDDYENHDFWFRCMYMLIWGKFVL YKYVTCWLVTEGVCILTGLGFNDFDENRKAKWDACANMKVWLFETNPRFTGTIASFNINT NAWVARYIFKRLKFLGSKELSQGLSLLFLALWHGLHSGYLVCFQMEFLIVIVERQAASLI RDSPALSRLASVTVLQPFFYLVQQTIHWLFMGYSMT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AGYYYTATGTYDIKWTMPHCVLTLKLIGLAIDYFDGGKDQDSTEPGPTSLIHWVQLLLRVQRSVPNSLSSEQQKYAIRGVPSLLEVAGFSYFYGAFLVGPQFSMNHYMKLVQGQLTDTPGRIPNSTIPALKRLGLGLVYLVGYTLLSPHITEDYFLTDDYENHDFWFRCMYMLIWGKFVLYKYVTCWLVTEGVCILTGLGFNDFDENRKAKWDACANMKVWLFETNPRFTGTIASFNINTNAWVARYIFKRLKFLGSKELSQGLSLLFLALWHGLHSGYLVCFQMEFLIVIVERQAASLIRDSPALSRLASVTVLQPFFYLVQQTIHWLFMGYSMT | |||||||||||||||||||
1 | 6bugC | 0.15 | 0.12 | 4.12 | 2.26 | SPARKS-K | VKVEPTINGTQSLLNFLGISYLTFRAVGMIIEMRDGVLKE----------------------------------------FTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNR--DELLNMLEQAVKYIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGFNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKSPINFDK---------------PFISRDMKEFWNRWHMSLSFWFRDFVFMRLKVFKNSNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKKAGLKPLNKWTKALGIFITFNTVMLSFL | |||||||||||||
2 | 6bugC | 0.13 | 0.10 | 3.59 | 2.89 | FFAS-3D | ------------------ISYLTFRAVGMIIEMRDGVLKE----------------------------------------FTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNRDE--LLNMLEQAVKYIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGGNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKSPI---------------NFDKPFISRDMKEFWNRWHMSLSFWFRDFVFMRLVIVLMRNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKKLKPLPENKWTKALGIFITFNTVMLSFL | |||||||||||||
3 | 6bugC | 0.13 | 0.11 | 3.69 | 2.05 | HHpred | -----------TQSLLNFLSYLTFRAVGMIIEMRDGVLK----------------------------------------EFTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNRD--ELLNMLEQAVKYIMLGFLYKFVLAIFGSML-LPPLKAQALSGIFNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKSP-------INFDK--------PFISRDMKEFWNRWHMSLSFWFRDFVFMRLVINKNRNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRAGLKPLPENKWTKALGIFITFNTVMLSFL | |||||||||||||
4 | 6bugC | 0.13 | 0.11 | 3.80 | 1.61 | MUSTER | LVKVEP-NGTQSLLNFLGISYLTFRAVGMIIEMRDGVL----------------------------------------KEFTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIP--NRDELLNMLEQAVKYIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGFNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKSPI---------------NFDKPFISRDMKEFWNRWHMSLSFWFRDFVFMRLVIVLMSNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRAGLKPLPENKWTKALGIFITFNTVMLSFL | |||||||||||||
5 | 4he8G | 0.07 | 0.06 | 2.31 | 1.32 | CNFpred | VYWAFGL------DGLSALFFLTIALTVFLGALVARV----------------------------------------GRFLGLALLMEGLLLGLFAARDLLVFYVFFEAALIPALLYGGEGRTRALYTFVLFTLVGSLPMLAAVLGARTFLLEDLLAHPLQE-EAAFWVFLGFALAFAIKTPLFPHAWLPPFHQENHP---------------------SGLADALGTLYKVGVFAFFRFAIPLAPEGFAQAQ---GLLLFLAALSALYGAWVAFAAKDFKTLLAYAGLSHMGVAALGVFSGTPEGAMG---GLYLLAASGVYTGGLFLLAGRLYE | |||||||||||||
6 | 6bugC | 0.12 | 0.10 | 3.48 | 5.42 | HHsearch-2 | LILKVEPTINGTQSLLNFLSYLTFRAVGMIIEMRDGVLK----------------------------------------EFTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNRD--ELLNMLEQAVKYIMLGFLYKFVLQIFGSMLL-PPLKAQALGGIF----NLPTLGVMYVYGFDLFFD--FAGYSMFALAVSNL-------MGIKSPINFDKP--FISRDMKEFWNRWHMSLSFWFRDFVFMRLVINKNSNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKALKPLPENKWTKALGIFITFNTVMLSFL | |||||||||||||
7 | 6bugC | 0.14 | 0.11 | 3.86 | 2.54 | Neff-PPAS | --------GTQSLLNFLGISYLTFRAVGMIIEMRDGVLKE----------------------------------------FTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIP--NRDELLNMLEQAVKYIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGFNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKSPI---------------NFDKPFISRDMKEFWNRWHMSLSFWFRDFVFMRLVIVTTSNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKKAGPLPENKWTKALGIFITFNTVMLSFL | |||||||||||||
8 | 6bugC | 0.12 | 0.10 | 3.48 | 7.31 | HHsearch | LILKVEPTINGTQSLLNFLSYLTFRAVGMIIEMRDGVLK----------------------------------------EFTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNRD--ELLNMLEQAVKYIMLGFLYKFVLQIFGSMLL-PPLKAQALGGIF----NLPTLGVMYVYGFDLFFD--FAGYSMFALAVSNL-------MGIKSPINFDKP--FISRDMKEFWNRWHMSLSFWFRDFVFMRLVINKNSNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKALKPLPENKWTKALGIFITFNTVMLSF- | |||||||||||||
9 | 6bugC | 0.13 | 0.11 | 3.81 | 2.04 | PROSPECTOR2 | MVLALTGTHASTQSLLNFLGILTFRAVGMIIEMRDGVLKE----------------------------------------FTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNR--DELLNMLEQAVKYIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGG--IFNLPTLGVMYVYGFDLFFDF--AGYSMFALAVSNL-------MGIKSPINFD--KPFISRDMKEFWNRWHMSLSFWFRDFVFMRLKVFKNRNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKKTINKDRKKAGLKPLNKWTKALGIFITFNTVMLSFL | |||||||||||||
10 | 6bugC | 0.14 | 0.10 | 3.48 | 3.12 | SAM | -------------SLLNFLSYLTFRAVGMIIEMRDGVLKE----------------------------------------FTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNR--DELLNMLEQAVKYIMLGFLYKFV---LAQIFG--SMLLPPLKAQALGIFNLPTLGVMYVYGFDLFFDF--AGYSMFALAVSNL-------MGIKSPINFDKP--FISRDMKEFWNRWHMSLSFWFRDFVFMRLVIV--SNVAYIINMMVMGFWHGITWYYIAYGIFHGIGLVINDAWLRKKK----------T-PENKWTKALGIFITFNTVMLS-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |