Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | GRAGPKLLAGILCDKFLQHLPLNRQSAAFAREGIDLDTSTLADWVGACTATLAPLTALIRAHVLAARRLHADDTTVPVLARGRTVTGRLWNYVRDDAPFGGLAPPAVWFRYSRDRKGEHPADHLTGWTGILQSDAYGGYTHLAKPGRQPAPVVPAGCWAHGRRGLFKIAEKDKAPLAIEAVRRIDAIFDAERAINGSSAAHRLEIRKESIAPLVEELLDWMRDTCRRMSSKNPIAQAMNYILRRGDTFTVFLEDGRICLTNNAAERAIRGIALGRKAWLFAGSDRGGE |
1 | 5cwpA | 0.11 | 0.09 | 3.10 | 0.71 | SPARKS-K | | ---MSSDEEEARELIERAKEAAERAQEAAERTG----DPRVRELARELKRLAQEAAEEVKRD--------------------------------PSSS-----------------------DVNEALKLIVEAAAVRALEAAERTGDP--EVRELALVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSE-EVNEALKKIVKAIQEAVESLREAEES----KARERVREAVERAEEVQRDPSGWLE- |
2 | 2bw3A | 0.11 | 0.10 | 3.53 | 0.87 | FFAS-3D | | ----KEAIEKCAQWVVRDCRPFSAVSSGFIDIKFFISPITLSRVTSDAKEKKALIGREIKSAVEKDGAATIDLWT-----DNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTKKLKAIFSQFNVKFVTDRGANVVKSLA------NNIRINCSSHLLSNLENSFEETPELNPILACKNIVKYFKLQHRLRSSLKSECPTRWNSSILDNWESVIQILSEAGETQRIVHINKSIIQNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSP------------ |
3 | 4fcyA | 0.09 | 0.07 | 2.77 | 0.52 | HHpred | | SEFDEDAWQFLI-ADYLRKPAFRKCYLAAREHGWSPSRATAFRRIQQLDEAMVVACRALMEHLDAMQWINGDGYLHNVFVFN-GDVIRPKTWFWQDV----KTRKILGWRCDVSENIDSIRLSFMGIPEHITIDNTTGGAGLFLL----MGAKMHW----LEEYVDKHAGANPQAKPDN--------YG--DR--A-----------VDAELFLKTLAEGVAMFNARTGRKSFDD----VFE----REYART--IVRKPTEEQKRMLLLPAE-AVNVSKG-------- |
4 | 5cwpA | 0.11 | 0.09 | 3.11 | 0.75 | MUSTER | | -MSSDEEEARELIERAKEA--AERAQEAAERTG--------DPRVRELARELKRLAQEAAEEVKR---------------DPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVR-----------LAVEAAEEVQRNPSSSDVNEAAIEAAVRALEAAERTGDEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPE-KREKARERVREAVERAEEVQRDPSGWLE---------------------------- |
5 | 4d1qA | 0.12 | 0.10 | 3.54 | 0.87 | CNFpred | | ---GSGFID-----------MIKFFIKVGAEYGEH-SPITLSKVTSDAKEKKALIGREIKSAVEKGASATIDLWTDNYI---KRNFLGVTLHYHEN----ELRDLILGLKSLDFSTAENIYKKLKA-SIKFVTDRGANVVKSLA------NNIRINCSSHLLSNVLENSFEE-TPELNMPILACKNIVKYFKKANL--RWNSTYTMLRSILDNWESVIQILSEAGETQ--NKSIIQTMVNILDGFERIFKELQTCSS-PSLCFVVPSILKVK---------------- |
6 | 1vt4I | 0.09 | 0.08 | 3.17 | 0.58 | HHsearch-2 | | SILSKEEIDHIIMSKDA----VSGTLRLFWTLQEEMVQKFVEEVLRINYKFLTRPYLKLRQALLPAKNVLIDGVLG----SGKTCLSYKVQ-CK-------MDFKIFWLNLKNCNSPETVLEMLQIDPNWSRSDHSSNIKLRIHSIKPYENCLLVLLNVQNAKAW-NAFNLSRFKQVTDFLSEVKSLLDLPREVLTTNPRRLSIIAE----SIRDGLATWDNWKH--VN-CDKLTTIIESSLNVLEYRKMFDRLSVFPPHIPTILLSLIWFNKLHKYSLVEKQPKEST |
7 | 5cwqA | 0.10 | 0.08 | 2.95 | 0.77 | Neff-PPAS | | -----EELERESEEAERRLQEARKRSEEARERG---DLKELAEALIEEARAVQELARVACERG----------------------------------------------------NSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGGW |
8 | 4cxfA2 | 0.13 | 0.02 | 0.84 | 0.53 | HHsearch | | GKL-DTGSREVIVLTAIVGMSQPEAAAVL-----GLSVKAVEGRIGRARAKLSALLDADS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
9 | 5cwpA | 0.11 | 0.08 | 3.03 | 0.69 | SP3 | | -MSSDEEEARELIERAKEA--AERAQEAAERTG--------DPRVRELARELKRLAQEAAEEVKRDP-----------SSSDVNEALKLIVEAIEAAVRALEAAE----RTGDPEVRELARELVRLA--------VEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAADPEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDP-EKREKARERVREAVERAEEVQRDPSGWLE---------------------------- |
10 | 2bw3A2 | 0.10 | 0.09 | 3.38 | 0.89 | PROSPECTOR2 | | SHQSKEAIEKCAQWVVRDCRPFKFFIKVKAEYGEHVSPITLSRKVTSDAKEKALIGREIKSAVEKDGAATIDLW--TDNYIKRNFLGVTLHYHENNELRDL----ILGLKSLDFERSKKLKAIFSQFSIKFVTDRGANVVKS------LANNIRINCSSHLLSNVLENSFECSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVN-----IIKNVRIIWEENLSILHQQEKVAQIKEFCLSKEDLELINRSSFNELSPPVCPSDEFEFYRKEIVILSEDFKVEFCK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|