Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | CQFNKLNTVVCQYHKVFCLYQCCQCKKYHICDGSKTCILINTGESLVCTLTGNCIFNNFQENTFLKQDNVKESKQQFDFTLFANILESLKQDLENYFIKSYGLEEVSKAILDNNSLKPEICDLIRCTFQHCCHIFGEIQYGYDIICSMYIHIIISIYSTKTVYGNLLFKCTKNKKYDYILKRMRETWMST |
1 | 2f07A2 | 0.07 | 0.05 | 1.93 | 0.72 | SPARKS-K | | --------------------------------------------------------LIPAIAENLLTHTLDQIKGRLHGDEFWTVLDILIDETFLITERHKDIVLCYSGLAIDH-SMEKWETIYQPYYSWLEKIINKSKWTARTIINLVENTAERFYIGF----------EQDENVEVYKKEIFTFLKRS |
2 | 2r3vA2 | 0.11 | 0.07 | 2.64 | 0.59 | FFAS-3D | | ---------------------------------------------ILLTNTKV---------------------PRNTRALVAGVRNRLLKIVAPLLTSIDAISLECERVLGEEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTRLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQALTSC |
3 | 1n4mA2 | 0.17 | 0.11 | 3.46 | 0.28 | HHpred | | ---------------------------------------------------------------LAWLSDIKQSKTREGK---STSLSLFYKKVYRLAY--LRLNTLCERLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGKIIVTAYKDQETFKRVLI--KEEEYDSIIMQRLKTNIL-- |
4 | 2deiA | 0.08 | 0.07 | 2.92 | 0.66 | MUSTER | | NEFVGVPCQFAVVFGREGNVIFLDTHTLDY-------EYIPFPKDILVFYTGVRRSSEYAERKHIAEESLKILGKGVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKE-GNV-EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLAYGAR---T-FGGSAIALVDKEDAETIGEEILREYLKR |
5 | 4wvfC | 0.05 | 0.03 | 1.27 | 0.60 | CNFpred | | -------------------------------------------------------------------------------DVVKVLVEPLLNAVLEDYMNN-EVLNCMTTVVEKHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS---FAAFLELP-PAAFKLFVDAICWAFKHN |
6 | 1kmhA4 | 0.14 | 0.05 | 1.81 | 0.42 | HHsearch-2 | | -----------------------------------------------------------QPQSAPLTVEEQGTNGYLDSLELDQ-VRKYLVELRTYVKTN--KPEFQEIISSTKTFTEEAEALLKEAIQEQMERF------------------------------------------------------- |
7 | 2f07A2 | 0.09 | 0.06 | 2.22 | 0.66 | Neff-PPAS | | ------------------------------------------------------IPAIAENLLTHTLDQIKGRLHGDED--FWTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAKWTARTIINLVENTAERFYIGFEQD----------ENVEVYKKEIFTFLKRS |
8 | 3bzkA6 | 0.16 | 0.04 | 1.40 | 0.38 | HHsearch | | ----------------------------------------------------------------------------------------------RYLRELERRGAILASIEEQGKLTPELARDIKLADTK------------TRLEDLYLPY-----KQK--------------R--------------- |
9 | 4grvA | 0.07 | 0.06 | 2.42 | 0.60 | SP3 | | NKLTVMVNIFEMLRIDE----------------GLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLD-----AVRRAALINMVFQMGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQ------TPNRAKRVITTFRTGTWDA |
10 | 1p5zB | 0.06 | 0.05 | 2.10 | 0.71 | PROSPECTOR2 | | --------------RIKKISIEQLCEDWEVVPEPVA--------------------RWCNVQSTNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKFASNLYESECMNETEWTIYQDWHDWMNNQFGQQGIPLEYLEKLHYKHESWLLHRTLKTNFLTLDVNEDDKYESLVEKVKEFLSTL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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