Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MKIYGCISGLLLFVGLPCCWCTFYPCHAAEARNFTYISHGLGHVHGHEGCRNFINVTHSAFLYLNPTTPTAPAITHCLLLVLAAKMEHPNATIWLQLQPFGYHVAGDVIVNLEEDKRHPYFKLLRAPALPLGFVAIVYVLLRLVRWAQRCYL |
1 | 2wvhA1 | 0.11 | 0.10 | 3.60 | 0.52 | SPARKS-K | | YTVGTYLAERLVQIGLK--HHFAVAGDYLLNKNMEQVYC----CNELNCGFSAEGYKGAAAAVVTY----SVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQNITAAAEAIYTPEEAPAKIDHVIKTALREKK |
2 | 2ej9A | 0.15 | 0.12 | 3.98 | 0.43 | FFAS-3D | | ------------------------------KRNFIVLADKQNNGKGRWG-RVWYSDEGGLYMVLDSKLYNPKVINLLVPICIIEVLKNPN-DIMVKVNDNYKKLGGYMIIGIGINVNNQIRNEIREIAISLKEITKVEILSNFLKTFESYL- |
3 | 1nhjA2 | 0.19 | 0.13 | 4.23 | 0.29 | HHpred | | ----------------------------AFLEQALAIEWGDLTLRGWVADPNHPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLQQPAFVLYLEIDP------HQVDVNVHPAKHEVRFHQSRL---------VHDFIYQGVLS------ |
4 | 3dwwA | 0.15 | 0.13 | 4.43 | 0.61 | MUSTER | | LPAFLLCSTLLVIKMYVVAIITGQ--VRLRKKAFAN-ALRHGGPQYCRS-DPDVERCLRA--HRN--DMETIYPFLFLGFVYSFLGPNPFVAWMH----LVF-LVGRVTVAYLGKLR----APIRSVTYTLAQLPCASMALQILWEAARHL- |
5 | 3c3jA | 0.08 | 0.07 | 2.58 | 0.69 | CNFpred | | ------LQGAARESALKVLELTA---------KLAAFYDSPTGF--RHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELRRDNQ---AMRVIAIAAESSDIVAAGPHIILPPSR----------HFIDVEQAFCFLMYAQTFALMQSLHM |
6 | 2pffB | 0.23 | 0.23 | 7.20 | 0.91 | HHsearch-2 | | MDAYSTLLVTASFKILPEPTEGFEPTTPAEGKFLGYVSSLVEPVTEFENCYLEGNDIHAKLLQENDTTLVKTKELIKNYIRIMAKRKKSNSALFRAVGE---GNAQLVAIFGGQGNTDDYFEELRDLYCPLILVASDLINKDLVKNNVSFNA |
7 | 3wvaA | 0.10 | 0.09 | 3.20 | 0.54 | Neff-PPAS | | ----ANIGLTIHKAAAGFEFKYLFSEEDLKLKNVRVISAFVPS---IIGVEKLLDIK----LPEPDFNYSEEKDLEVAKLAEGLKKKL-NVNISIGSTRGAICILTRYLFTSDVYANLIT----FENIKERQKNGIEKGIKRFLEILKKEYF |
8 | 1nhjA2 | 0.19 | 0.13 | 4.26 | 0.32 | HHsearch | | ---------------------------TAFLEQALAIEWGDLTLRGWVADPNHPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLQQPAFVLYLEIDP------HQVDVNVHPAKHEVRFHQSRL---------VHDFIYQGVLSVLQ--- |
9 | 1f6mA1 | 0.22 | 0.18 | 5.62 | 0.57 | SP3 | | -RYLG-LPSEEAFKGRGVSASAT--CDGFFYRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRDGFRAE---KILIKRLMDKVENGNIILHTTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL---FVAI---------------- |
10 | 2x4dA | 0.10 | 0.10 | 3.66 | 0.47 | PROSPECTOR2 | | AASRAELVGQLQRLGFDISEQEVTAPAPAACQILKE-RGLRPYLLIHDGVRSEFDQIDTSNPNCVVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKGRYYAATSGLMLDVGPYMKALEYACGIKAEPEFFKSALQALAEAVDLLLQHAD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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