Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | DSHIWKAMCEYWDTEEAIARSKIYSKARLSDRNGLGPHIHLSGPKSYQNIKHELEKELGRRVTVGEVFIKTHTKPDGTYVDKKAEQIVKNYEKKLQEKLSEMEAETSNVSDGESRPRELTIEDHTVIFLEVTETDTRGNYYGVGSLKDN |
1 | 1q80A | 0.08 | 0.07 | 2.91 | 0.72 | SPARKS-K | | WVQKMKTYFNRIDFMDFESMAERFAKESEMKAEHAKVLVAGGKGIDETTFINSMKEMVKNPGPLPLFFRAVDTNEDNNISRDEYGIFFGMLKTMAPASFDAIDTNNDGL---------LSLEEFVIAGSDFFMNDGTNKVF-WGPLV-- |
2 | 1q80A | 0.08 | 0.07 | 2.91 | 0.71 | FFAS-3D | | SDLWVQKMKTYFTRMDFESMAERFAKESEMKAEHAKVLVAGGKGIDETTFINSMKEMVKNPEAKPLFFRAVDTNEDNNISRDEYGIFFGMLKTMAPASFDAIDTNNDG---------LLSLEEFVIAGSDMNDGDSTNKVF-WGPL--- |
3 | 2z3oA | 0.15 | 0.07 | 2.49 | 0.22 | HHpred | | -------------------------------------SLH--ISRSMKR---FHKRSVTMNYAFGQVIEGCASDEEGTWITRGVVEAYHRLHEL-----------------GHAHS--------IEVWRELVGG-----MYGVAQG--- |
4 | 1w9rA | 0.12 | 0.09 | 3.34 | 0.90 | MUSTER | | GSHMPEKKVAEAE-KKVEEAKKKAEDQKEEDRRNYP----TNTYKTLELEIAESDVEVKK--AELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP----------------------- |
5 | 1dg3A | 0.12 | 0.09 | 3.29 | 0.60 | CNFpred | | MENAVLALAQIENSAAVQKAIAHYEQQMGQK-----VQLPTESLQELLDLHRDSERE------AIEVFIRSSF---KDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSG-------LLQVIFSPLEEEVK---------------- |
6 | 1vt4I3 | 0.16 | 0.14 | 4.66 | 0.76 | HHsearch-2 | | EYALHRSIVDHYNIPKTF----------DSDD----LIPPYLDQYFYSKNIEHPERMLFRMVFLDFRFLEQKIRHDGSILNTQQLKNDPKYERLVNAILDFLPKIE-ENL----ICSKYTDLEDEAIFEEAHKQVQRGG--GGGGGGGG |
7 | 1w9rA | 0.10 | 0.08 | 2.97 | 0.86 | Neff-PPAS | | GSHMPEKKVAEAE-KKVEEAKKKAEDQKEEDRRNYPTNTYKT------LELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP----------------------- |
8 | 1l0oC | 0.20 | 0.07 | 2.37 | 0.26 | HHsearch | | --------------------------DGTV-K----VSRSLKEGNKIRKAKDELSKTRGRAPTVTEIADHLGI-------SP--E----DVVLAQEA--VRL----------------------------------------------- |
9 | 1w9rA | 0.10 | 0.07 | 2.77 | 0.61 | SP3 | | PEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKT---------LELEIAESDVEVKKA--ELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP----------------------- |
10 | 1w9rA | 0.11 | 0.09 | 3.15 | 0.64 | PROSPECTOR2 | | GSHMPEKKVAEAE-KKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKA------ELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVK-----------------------EKP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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