Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | DWWYDDVSCLSLPLYKKVISAMEYRGINQDIIVGSLNHYAKRRLPGLNRRKSISDVSSCLSMSSLTSISSEEEQKYLLEEIDRLLPFQRGVTSCKLLFGLLRTAIILKASPSCVSNLERRIGMQLDKATVEDLLIPNISESVETLYDVDCIHRILDHFLAMEQETGGASPGLGEDAQMLASPSLMPITMVAKLIDGYQAEVAPDVNLKLPKFRSLAAAIPNYARPIDDGLYRAIDIYLKAHPYLSESEKEELCRVMDCQKLSLEAC |
1 | 5cwcA | 0.13 | 0.09 | 3.15 | 0.72 | SPARKS-K | | ----SEKEELRERLVKICVENAKRKGDDTEEAREAAREAFELVREAAERAGIDSS-------------EVLELAIRLIKECVENAQREGYDISAEAFKRVAEAAKRAGISSEVLELAIRLIKECVENAQREG---------YDISEACRAAAEAFKRVAEAAKRAG--------------ITSSETLKRAIEEIRKRVEEAQREGNDISEACRQAAEEFRKKAEELKRR------------------------------------- |
2 | 3gjxA3 | 0.09 | 0.08 | 2.87 | 0.80 | FFAS-3D | | ---TAEIPQIFDAVFECTLNMINKDEEYPEHRTNLLQAVNSHCFPAFLA-------------------IPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDI----LQHIFSVVTDTSHTA--GLTMHASILAYMFNLVEEGKISTPLN-------PGNPVNNQMFIQDYVANLLKSA--FPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKSDLFLEERETALRQAQEEK------ |
3 | 4rxxA | 0.13 | 0.11 | 3.65 | 0.37 | HHpred | | --------CIPITFCQQLVRTIGHFQCVSELVSNLLQNIWKA-EPATSSTDSFEPSVAASQIPLQITNVKDAS-TQALCR-IDWLSWPLAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVF-----NRLWFPLVR---------PGALAVLSH-LLSFQ------------------HSPEAFHLIVPHVVNLVHSFKNDGLPSSTALVQLTELIHCYHYSGFPDLYEPILEAIKDFPKPSEEKIKLILN---QSAWTS--- |
4 | 5jo8A | 0.11 | 0.10 | 3.52 | 0.66 | MUSTER | | -----EPEPLSEKALREASPAIEVFG---EALVSGAYSWSYRE--ALLA-----YKKLMEMSVSTPKEDLRNMLRAAIFLVRRAIKDIVSSVFQASLKLLKMIITQYVPKHKLGKLETSHCVEKTLPGLLSRT-----GDSSSRL--RIVAAKFIQEMALWSEVKPLQIVPVHLVQLLKPNSPTHLAMSRVELVECLLKEMGTENGFTISNVMKFATGA-DVALRI--GMYRKHKAAILEYPPDDASIRKVLYKTLF-TKI----- |
5 | 4gmxC | 0.08 | 0.06 | 2.51 | 0.84 | CNFpred | | --IPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE----------------PPAAFKLFVDAICWAFKHNVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVS--ETFFVLTDSD-----HKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGT-------SNQVYLSQYLANMLAFPHLTSEQIASFLSALTKQCKDL-VVFKGTLRDFLVQI------------------------- |
6 | 1vt4I | 0.17 | 0.16 | 5.32 | 0.88 | HHsearch-2 | | DAFVDNFSILSKEEIDRLFWTLLSKQMVQKFVEEVLRINYKQRQPSMMTRMYIERDRLYDNQVFAYNVSRLQPYLKLRQALLELRPAKKNETVLEMLQKLLYQIDPNWTSRSHSSNIKLRIHRLLKSKPYENCLLVLLN--------VQ-NAKAWNAFNLSCKTTHISDHHTPDEVKSPQEVLTTNPRRLSIIAESIRDGLATWDHVNCDKLTTIIESSPAEYRKMFDAHIPTILLSLIW-FDVIKSDVMVVV--NKLHKYSLVEK |
7 | 5ue0A | 0.09 | 0.08 | 3.18 | 0.82 | Neff-PPAS | | ----NEMAAIAMQGFRSMIEQFNVNNATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQADGLATAMGQVAFAAASAGTAGTVQMNVQLYKTAFSSTSSSSYAAALSDGYSAY----TLNSLYSES------RSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQANQEEIMQLTASISKAPQ-SVDSLQKFAAQLEREFVDGERSLAESQENAFRKQPAFIQQV |
8 | 1vt4I3 | 0.09 | 0.08 | 2.87 | 1.10 | HHsearch | | TFDSDDLIYLDQYFYSHIGHHLKNIEH-PERMTLFRFRFLEQKIRHDSTAWNASGSILNTLKFKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH-KQVQRGGGG------------GGGGGG------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG-GGGGGGGGGGGGG--G-GGGGGGGGGGGGGGGGGG-G---GGGGGGGGGGGGGGGGGGGGGGGGGGG- |
9 | 5h7cA3 | 0.07 | 0.05 | 1.86 | 0.57 | SP3 | | ----------DNEIVKQLAEVAKEAT-DKELVIYIVKILAELA--KQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSAFYEIL-------SLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEA--------------------------------------------------------------------------- |
10 | 5vchA3 | 0.09 | 0.08 | 3.19 | 0.78 | PROSPECTOR2 | | KEYPASALAVIQTVREVSLNNVIEEVETSDQLCREALSVLKGEHACQTILDASETEATLLDVLQLCQSKSKNKRSFAVGALSEIALGRDENPFIQELLEALIISLTNDKSLEVRCNASYGVGLLIEYS------------SFDVSAIYSPVLKSLYEILSVADEKNLATEDDEATKEIARILKHQNLVPLEHTIPALLSHLPFNTAFEEYDFLKLFQEQNSTIINEAPKVIAIFATVFERKQFQSEEIKQQVIELLKNQQFNGAVA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|