>PF02554 (377 residues) VNAIWLIVAAVCVYAIAYRFYSKFIAKKVFQLDDNRKTPAEIFNDGKDYVPTNKWVLFGH HFAAIAGAGPLVGPILAAQMGYLPGTLWIIVGVVLAGAVQDFIILFASMRRNGKSLGEMI KEEIGPVTGFIAMLGILGIMIILLAVLALVVVKALVGSPWGMFTIAATIPIAIFMGVYMR YMRPGRVGEASFIGFVLLMLSIVAGQYVAENPTLANMFTFKGETIALLMIGYGFVASVLP VWLLLAPRDYLSTFLKIGTIVGLALGILFVAPDLQMPAITKFVDGTGPVFAGNLFPFLFI TIACGAVSGFHSLVSSGTTPKMIERESHARPIGYGAMLMESFVAVMALIAACVLTPGTYF AINSPAAAIGQDVVQAA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VNAIWLIVAAVCVYAIAYRFYSKFIAKKVFQLDDNRKTPAEIFNDGKDYVPTNKWVLFGHHFAAIAGAGPLVGPILAAQMGYLPGTLWIIVGVVLAGAVQDFIILFASMRRNGKSLGEMIKEEIGPVTGFIAMLGILGIMIILLAVLALVVVKALVGSPWGMFTIAATIPIAIFMGVYMRYMRPGRVGEASFIGFVLLMLSIVAGQYVAENPTLANMFTFKGETIALLMIGYGFVASVLPVWLLLAPRDYLSTFLKIGTIVGLALGILFVAPDLQMPAITKFVDGTGPVFAGNLFPFLFITIACGAVSGFHSLVSSGTTPKMIERESHARPIGYGAMLMESFVAVMALIAACVLTPGTYFAINSPAAAIGQDVVQAA | |||||||||||||||||||
1 | 3l1lA | 0.11 | 0.09 | 3.29 | 1.78 | SPARKS-K | ------------------------------------------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFKDPWVLTITCVVVLWIFVLLNIVG----PKMITRVQAVATVLALIPIVGIAFWFRGETYMAAIQSTLNVTLWSFISASVAAGVKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALSPFGDAARMALGDTAGAIVSFCAAAGCLGSL--GGWTLLAGQTAKAAADDGLFAGTPVAGLIIVGILMTIFQLVSSVSVIFTLVPYLYTCAALLLLGHGHF | |||||||||||||
2 | 3l1lA | 0.13 | 0.10 | 3.47 | 1.08 | FFAS-3D | -------------------------------------------------------------SGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPG-GSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQSTLNVTLSASVAAGVVPKRNV--PIATIGGVLIAAVCYVLSTTAIMGALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGAKAAADDGLFPPIFAR-VNKAGTPVAGLIIVGILMTIFQL---------------------------- | |||||||||||||
3 | 5aymA | 0.11 | 0.10 | 3.72 | 1.18 | MUSTER | LRIETQLLLGRLLTRSGDQAWDFVVPFALLVIFPGKLQVA-----GKDTHPRIQVVKWGVWLQFFAILAGMVFFGMLDGLVRAWLLSVLFIALALSGVMASLGSQITDI----SVGNDLAPSLVAPE-KLTHFNSWLRRIDLATEVGAPILAGALFPLAGLFLIGLWNLVSFVPEYFLLRNVIQRS-IFWLILSYALLWLSVLSPHGVLLAAYLKDEMRLPETEIGLFRGLGAVFGLISTVSFPYLVRRLGLISSSRWHLGFQGVTLGIA-------VTAFAMGSTAS-----VYVFLGCILLSRVGLYGFSNGEFELRQRLIPEGRRGE--LNSLSSLTTTSATLILFSAGSLL-PQTEDFKYLVYVSLAAVLLAN | |||||||||||||
4 | 3rkoB | 0.14 | 0.12 | 4.24 | 1.64 | CNFpred | GLSLTMLSVVTGVGFLIHMYASWYMR--------GEEGYSRFF---------AYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGMKAFVVTRVGDVFLAFALFILGTLNFREMVELAP-NMLMWATLMLLGGAVGKSAQLLQTWLADAMAGTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAA-----LVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACEQNIFKMGGLRK--SIPLVYLCFLVGGAALSALVTAGFFSKDEILAGAMANG-HINLMVAGLVGAFMTSLYTFRMIFIVFHG----------------------- | |||||||||||||
5 | 6cseM | 0.11 | 0.11 | 3.98 | 1.61 | Neff-PPAS | ----PYMLVLLLGTGIFLTLRLGFMQIHTLPYALKLAFSKETSEGD-----ISHFQALMTALAATIGTGNIAGVATAYVLGGPGAIFWMWVTAFFGMATKYAEAVLAIKYRTVDGPMYFLEKGLPILGVAFAFFGAFAAFGIGNMVQTNSVADAVASNDPLITGFVLAIFTAAVILGGIKSIGKATGIIVPFMAVFYILAGLVILAMNIGYIIPAFGTIFSMWGVKRGVFSNEAGLGSAPIAAAAALVSMTGTFLDTIVVCTITGLVLTIAGLKAASLTAASFDALMPMGGLIVTIGLVFFAYSTVLGWSYYGEKCFEYLIGTKGIRLYRIAFVLVAFWGATASLPLVWNIADTLNGAMAIPNLIGLLLLSGVVVSE | |||||||||||||
6 | 5oqtA | 0.11 | 0.11 | 3.79 | 1.38 | PROSPECTOR2 | LFR-----------KKPIQLLMKESGAKGASLRKE----------------LGAFDLTMLGIGAIIGTGIFVLTVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFDPAKGTFIDLPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTPIGIIVSLLVCTLLYIAVSLVLTGQLNVKNPVAFALNYIHQDWVAGFISLGAIAGITTVLLVMMYAISRDGLLPKVFARISPTRIIPLNKLAELTNIGTLFAFITVSILKRAFRVPFVPVVPYGRKHSELN | |||||||||||||
7 | 6cseM | 0.13 | 0.12 | 4.15 | 1.65 | SPARKS-K | YMLVLLLGTGIFLTLRMQIHTLPYALKLAFSKETSEGD-------------ISHFQALMTALAATIGTGNIAGVATAYVLGGPGAIFWMWVTAFFGMATKYAEAVLAIKYRTVGGPMYFLEKGLPKILGVAFAFFGAFAAFGIGNMVQTNSVADAVASNFGVDPLITGFVLAIFTAAVILGGIKSIGKATGIIVPFMAVFYILAGLVILYIIPAFGTIALIGTAIMWGVKRGVFSNPIAAAPGRQALVSMTGTFLDVCTITGLVLTIAGLKAFLTAASFDALMPM-------GGLIVTIGLVFFAYSTVLGWSYYGEKCFEYLIGTKGYRIAFVLVAFWGATNGAMAIPNLIGLLLL--------SGVVVSETKAFN | |||||||||||||
8 | 3l1lA | 0.12 | 0.10 | 3.65 | 1.16 | MUSTER | ----------------------------------------------------AHKVVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFLKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGFWFRGETYMAAIQSTLNVTLWSFIGVESASVAAGVVKPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPALGDTAGAIVSFCAAAGCLGSLGGWTLLGLFPPIFAR-VNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFSVSVIFTLVPYLYTCAA | |||||||||||||
9 | 4he8F | 0.14 | 0.12 | 4.10 | 1.61 | CNFpred | NLSGFMLLIVTGVGFLIHVYAIGYMGG--------DPGYSRFF---------AYFNLFIAMMLTLVLADSYPVMFIGWEGVGLASFLLIARKAFIVNRIGDLGFMLGMAILGTLSISELKEAM-NPDLLALAGLLLFLGAVGKSAQIPLWLPDAMAPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSA-----FGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALEQDVRKMGGLW----KHLPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTYPFGVGFYVGALLVAVLTAMYAMRWFVLVFLG-------------------- | |||||||||||||
10 | 3l1lA | 0.11 | 0.09 | 3.37 | 1.54 | Neff-PPAS | ---------------------------------------------------VGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPG-GSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYLKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQSTLNVTLWSFIGVESASVAAGVVKPIATIGGVLIAAVCYVLSTTAIMGMIPNAASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |