Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MDHRDINTNMEALREALRYKNEVAGHGFSFDDGDLVWREEDDATWRRLCDVVNALISSKRMQRVLYMDLSITKGEGHLLLVDLQGTKNRLYKEPRFRRHLILIEDFLAYPR |
1 | 6i19A | 0.11 | 0.10 | 3.59 | 0.62 | SPARKS-K | | GSVIVIDSK-AAWDAQLAKGKEEHKPI------VVDFTATWCGPCKMIAPLFETLSNDYA-GKVIFLKVDVDATAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA-- |
2 | 1gvnB2 | 0.16 | 0.14 | 4.77 | 0.51 | FFAS-3D | | -----VPKINSYLGTIERYETMYADDP---MTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI-----RLYNREGVKLYSSLEKELNRKVSGKEIQPTLERIEQKMVLNK |
3 | 5z34A | 0.16 | 0.12 | 3.89 | 0.35 | HHpred | | VSHE--YTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQEIGDQKRQMAHNTSFQVMLYDCTWPTTNPGLWPYTL---------------------------- |
4 | 1t3tA2 | 0.20 | 0.20 | 6.32 | 0.74 | MUSTER | | MAAAGHPGEDAGLYDAVKAVGEEL-LGLTIPVGKTRWQEGNEEMTSPLSLVISAFARVEDVRHTLTPQLS--TEDNALLLIDLGKGHNALQVYRQLGDKPADVRDVAQLKG |
5 | 1ukfA | 0.13 | 0.12 | 4.05 | 0.59 | CNFpred | | LSNDDEAPFFTASTAVIED------AGFSLRREPKTVHAS-GGSAQLGQTVAHDVAQS---GRKHLLSLRFANVQGHAIACSCEG--QFKLFDPNLGEFQSSRSAAPQLIK |
6 | 1vt4I3 | 0.14 | 0.13 | 4.29 | 0.36 | HHsearch-2 | | --EYALHRSIVD--H---YNI-----PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLEQKIAWNASGSILNTLQQKPYICDNDPKYERLVNAILDFLP |
7 | 3d9rB | 0.10 | 0.10 | 3.66 | 0.59 | Neff-PPAS | | --SKIFNEELAVIEAAAIAYLTAFNRATYTDDGVLGPGRPAAVGKDELAEVYLSVFETVGFDAYEIKEVVQTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSAT |
8 | 4kujA2 | 0.19 | 0.12 | 3.78 | 0.42 | HHsearch | | ----------------GYFI------KYIDNNGWI--NES---E---FHSTLHAF-----------AHWTWVHTKGALLICDIQGVNANYLTDPALHHFIVGISQFFRTP- |
9 | 4fm4A | 0.20 | 0.20 | 6.33 | 0.69 | SP3 | | TDNAVMEQRVDALFVLTKELGLVTDHDWLPQNGKLVWT--DPVFKAQLLSEGVAASESFPKHHKHFVVLENTPELHNVICCSLSTAFTIIYKELEYRARIVVLKEILDLPE |
10 | 6bjtA | 0.04 | 0.04 | 1.95 | 0.42 | PROSPECTOR2 | | EMQINLPEVHAEVTAQFVRYEKALTSNLFWNSPQTLRYGATENLYEAIAGFRATRSPNNLEREIVRTVITTYGHDFATANIEFRRLHSQLTG--RQSQTWMRTSQLIALPV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|