Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LTVAVLLGAIIGHERRRSERGVGIQTMAITCLASALYTWGGMFCEGTGPSKWDTSRVAAAVVSGVSFIGGAVIVKGSDKNPHVHGLTTATSVWLSAALGLMAGGALYPVAFFAAFTAVFYLRFGPSTH |
1 | 3rlbA | 0.13 | 0.13 | 4.59 | 1.01 | SPARKS-K | | LTEIAFMAALAFIISLIVYGWIIVEACIPILLLSLRRIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPLGTFVAVLLKYFFHFIAGIIFWLAVNGISGILTAIAAFVILII |
2 | 6exsA2 | 0.13 | 0.13 | 4.58 | 0.79 | FFAS-3D | | LFILLFAPVISMIWLKMGKKQPSLKFSIGTLLAGLSYILIGLVGLGYGHTQFSVNVILSYVICVIGELCLSPTAAVKLAPKAFNAQMMSV-WLLTNASAQAINGTFIFLGTVAIVITLIILVFSPKIT |
3 | 4g1uA | 0.14 | 0.11 | 3.76 | 0.22 | HHpred | | ------------------------LMLGFLLILLVILALGSA-NMWHIWLNIRLPRVLLAVVVGCALAVSGTIMQGRNADPGLLGISSGAALCVGLIIVMLALYSHMVGAFIGSLAISTIISRWGHGN |
4 | 6e9nA | 0.16 | 0.16 | 5.20 | 0.82 | MUSTER | | AFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMM--IMCLMALAFFGNGFASITWSLVSSLAPMRLIGAGGLGGITVPLVVGYLAQGYLVYISAVALIGALSYILLVGDVK |
5 | 3rkoB | 0.12 | 0.12 | 4.14 | 0.96 | CNFpred | | ATLMLLGGAVGKSAWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ---DIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLAS |
6 | 5l75F1 | 0.13 | 0.12 | 4.33 | 0.57 | HHsearch-2 | | LPLSLFLGLLMTLGKLYTEHACGLSAAMILAVFTGAVAAVNVMWSRETDRAAELWRF-TLVATVFIMALMVVPVVNP-RQGRVLSMLPAMLLYLVFFLLQTSIKSWMWAINLLYFALAVLLNLW---- |
7 | 6e9nA2 | 0.12 | 0.12 | 4.16 | 0.93 | Neff-PPAS | | AFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGLVYISAVALIGALSYILLVGDVK |
8 | 6nbqD3 | 0.09 | 0.08 | 2.98 | 0.39 | HHsearch | | ELELIPVYLLLAIWGGHKRQYAATKFILYTAGSSLF-ILVAGLAFYGVSFDYALG-F--QL-LVYAGFLVAYGVKLPILHPDAGEATAPVHMLLAGI---LLKMGGYALIRMN-------VDMLPAA- |
9 | 4fp4A2 | 0.07 | 0.04 | 1.62 | 0.61 | SP3 | | -----------------------------------------------------GADVVTYLADVAQRLSVGQALDLEGERDKAAEFKTAPLIEAALVMPLVILGRRELIETAKKLGTKLGILYQ--YS |
10 | 4zowA2 | 0.05 | 0.05 | 2.48 | 0.67 | PROSPECTOR2 | | FVAGALALGFVSLSYERLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGIEISKHAWLNGGNGNLFNLVNGILWLSLMVIFLK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|