>PF02119 (341 residues) RIKDIAQVQGMRINQLVGYGLVVGLNGSGDGTQAKFTLQSIANMMERMGINVDPNQVKVK NAAGVMVTANLPTFTKPGQRIDCVVSSIGDAKSLQGGTLLMTPLKGPDGKIYAIAQGPLS IGGFAAGGAGGSVQKNHPTVGKIPNGAIVERTVDVDLNNRTSITYSLYYPDITTVARMAE AINDALGQDVAKAVDPESVRIDIPPEFQGNVLSFLSRIEAIEVDPDVKAKVVLDERTGTV VMGEDVRIKTVAVSHGNLSIQIKETPQVSQPAPFGAGQTVVTPATKVKVKEEKAHLMVLE SGPTIGELVRALNAVGVTPRDLISILQSIKSAGALQAELEV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RIKDIAQVQGMRINQLVGYGLVVGLNGSGDGTQAKFTLQSIANMMERMGINVDPNQVKVKNAAGVMVTANLPTFTKPGQRIDCVVSSIGDAKSLQGGTLLMTPLKGPDGKIYAIAQGPLSIGGFAAGGAGGSVQKNHPTVGKIPNGAIVERTVDVDLNNRTSITYSLYYPDITTVARMAEAINDALGQDVAKAVDPESVRIDIPPEFQGNVLSFLSRIEAIEVDPDVKAKVVLDERTGTVVMGEDVRIKTVAVSHGNLSIQIKETPQVSQPAPFGAGQTVVTPATKVKVKEEKAHLMVLESGPTIGELVRALNAVGVTPRDLISILQSIKSAGALQAELEV | |||||||||||||||||||
1 | 4wa0A | 0.16 | 0.13 | 4.28 | 0.81 | SPARKS-K | NTNKNLTVENGGDLTIDGGNLISKGENQDSDSRC------------------RDNNIVVRNIIYVSLKAN--RISPRSTNIDAKTIYVGQ-EQLYGAQLFSVKLAGPGNEVSASIRGTLEVIDGATKSNSAVYCNSLVSRLILENGAKLYLATTPDIQNNGGTISYSSSFSYPSPPAEIDEIRNRYTSGLGSTADPPQIVIYGES--YINDNEARIEISARPIVDFSTLQLHLISRGNITFVGGGLTINGSIISLGS-TFNINATG-----NPYAG----------LTLKYQ-----------PSPPIQQDIESNTGIQPSQ------------------- | |||||||||||||
2 | 3kyhC | 0.12 | 0.10 | 3.54 | 0.56 | FFAS-3D | ---------------------------PGLIQPGNVTQDLKMMVCKLLNVSFQHSDVEEKLLAHYYVCEKT-----DGLRVLMFIVI--NPVTGEQGCFMID----RENNYYLV----NGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMCLTQSPTSSRLAHLGKPYFDLRAAYPNRCTTFPFKISMKH--MDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKLKWKPEQENTVDFKLILDIPYDVKPVQPFDRKEFEILERTYRKFAELNGRIVECLNGNHTSVVQKVLESISVSLEDLEEIVGDIKRC--------- | |||||||||||||
3 | 3jc8Qa | 0.13 | 0.09 | 3.06 | 0.38 | HHpred | ---SVGRVDKAYDVRADGNRVVISVDGTSQSVDDTLSIGDIARELPRLGVGTRAPRVKSRDVRVVRLVLDVRGFESSGGRIVMKLSGTSGWDRPDPRSAVLKKFERLDTPVKMAFSVRLVVAA-DGAIEEKVSQSAGTLSWRLYRGKRVSFEFKDIKDVSGKVTIRLRNVPWDQALDLVLRTKAL-----GKEEFGNLMVNLLPVNYA-VAADMAARVKDVL---SERGSVTVDQRTNVLIVKDVR----------------------------------------------------------------------------------------------- | |||||||||||||
4 | 1a55A | 0.11 | 0.10 | 3.45 | 0.69 | MUSTER | ------------EASLTGAG----------TFPAPVYAKWADTYQKETGNKV---NYQGIGSSGGV--KQI----IAN-TVDFGASDAPLSDE---------KLAQEGLFQFPTVIGGVVL--VNIPGKSGELVLDGKTLGDIYLGKAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGG-KGNDGIAAFVQRLPAKQNNLAYTKLISADG-----KPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKYKTGAKQANDLDLPDSVVEQVRAAWKTNGKLY----- | |||||||||||||
5 | 2odlA | 0.14 | 0.09 | 3.20 | 0.75 | CNFpred | --AVFNRVT-QLKGILDSNGQVFLINP--------------------NGITIGK-DAIINTNGFTASTLDISNENIKARNFTFEQTK----DKALAEIVNHGLITVGKDGSVNLIGGKVKNEGVISV------------GGSISLLAGQKITISDII--NPTITYSIAAPENEAVN-----------LGDIFAK-GGNINVRAA------TIRNQGKLSADSVSKDKSGNIVLSAKEGEAEIGGVISAQNQQAKGGKLMITGDKV--------------TLKTGAVIDLSGKEGGETYLG----------------------------------------- | |||||||||||||
6 | 1u2lA2 | 0.06 | 0.03 | 1.13 | 0.35 | HHsearch-2 | ------IADGFRNYRAR-----------L--D-VSTTESLLIDKAQQLTLTAPEALVGGRVLG----------ANF--------------DGSK-NGVFTDRVGVLS-NDFFVNLL-----------DMRYEWKA-TDE-----SKELFEGRDR----ETGEVKFASRGSNSVLRAVAEV-----YAS------SDA------HEKFVKDFVAAWVKVMNLDRFDLL------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 4wa0A | 0.15 | 0.13 | 4.25 | 0.78 | Neff-PPAS | -----GALNTNKNLTVENGSVYSGGDLTIDGG-AVFNIDNLISKGEVINQRCRDNNIVVRNIIYVEKSLKANRISPRSTNIDAKTIYVGQE-QLYGAGSYKFVQLFSDSGVNEVSTLASIRGTLEVIDGANSLVVRNGSRLILENGAKLYLATTPDQNNGGTISYSSSFSYPSPPAEIDEIRNRDYTNQLGSTADTSIVIYGESYINDNEARIEISARLGSPIVDFSTLQLHLISRGNITFVGGGLTINGSIISLGSFNINAT-------GNPYA------------------GLTLKYQPSPPIQQDIESNTGIQPSQ---------------------- | |||||||||||||
8 | 2ma3A | 0.13 | 0.03 | 1.02 | 0.32 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAMGETGK------------------IDIDK-----------VEGRTPKS-ERDKFRLLELIKEYEDYGGRAPTNILITEMMRYNVSEEKVEELIRILKDKGAIFEPAK- | |||||||||||||
9 | 1d2fB | 0.18 | 0.07 | 2.39 | 0.76 | SP3 | ----------------------------------------------------------------------------------------------------------------------------------------------------------FDFSKVVLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN------DEFLAAIAHWFSTQHYTAIDSQT-----------------------VVYGPSSELIR----------QWSETGEGVVIHTMPVALEKQADGWFC-----DMGKLEAVLAKTGKTCDELEIMADLCERHGV---RVIS | |||||||||||||
10 | 4wa0A | 0.15 | 0.12 | 4.17 | 0.80 | PROSPECTOR2 | SPLDYAALNTNKNLTVENGSVYSGGDLTIDGGAVF----NIDNLISKGEVINQDSDSRCRDVRNIIYVEKSLKANRISPNIDAKTIYVG-QEQLYGAGSYKFVQLFSDSNVLASIRGTLEVGATVTLKSNSSLVVRNGSRLILENGAKLYLATTPDASNGGTISYSSSFSYPSPPAEIDEIRNRDYSNQLGSTADTSIVIYGESYINDNEARIEISARLGSPIVDFSTLQLHLISRGNITFVGGGLTINGSIISLGSFNINATGNPY-------------------------AGLTLKYQPSPPIQQDIESNTGIQPSQ---------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |