Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | LALPLLLSLGFWQLDRAAEKRALEAAFDAQRQAPPVELTRAEAADLARYQRVIVRGEFDNEHTWLLDNKQRSGRVGYEVVTPLVLEDGARILVNRGWIPSTGNRQQLPEVPAVAGERTLFAQVAEVSDHPMLDAHSDSRGWPKVILQIEPVTMGRQLGQRLAPFYLLIDDNSAGAFETRWQAVNMSTETHIGYAVQWFAMAL |
1 | 5z5dA2 | 0.07 | 0.06 | 2.49 | 0.65 | SPARKS-K | | NSDIFSTDWNFIQNPRLEHYSLKGRPSWLKMRGTEKTLNDINRQEHFVCVSTLLEFKPNQDNELTVYMNEK-----HHYEIALTKKNGRINVVLKKTVGDIQVVVNSLEYF-SN---TIIFSIQANPEEYKFSFVDPNTGQTYLLGTGLTTLLTEVAGTGVYFGLYATGNGKVCTAPAFFDWFKYIPE-------------- |
2 | 4h02A1 | 0.06 | 0.03 | 1.32 | 0.58 | FFAS-3D | | --------------LYFENRSKFIQDQKD-KGINPYPYKDLGNGEHLEDTILNITGR-------IMRVSASGQK---LRFFDLVGDGEKIVLANYSFHNHEKGNFECYDKIRRGDIVGIVGFPGKSKKGE------------------------------------------------------------------------ |
3 | 1zhhA1 | 0.16 | 0.12 | 3.95 | 0.26 | HHpred | | ------VLNGYWGYQEFLEQRNLTNALSEAVRAQPVPLSKPTQQVSDLNINYQLNQVFTRPNDIKQQMEALKSKSDYLIFTLDTTRNTKLILQNIT-TPVREW--------DKHQPFLYVGFMRMNDDTGI----------------AMAEAIKWDLEDKPVPTVYSGDF----EIVTK----ADSPE-------------- |
4 | 3wa1A1 | 0.10 | 0.08 | 2.94 | 0.64 | MUSTER | | -------------LPEISKKFYNLKNKYSRNGYGLSKTEFPSSIENCP----------SNEYSIMYDN---KDPR---FLIRFLLDDGRYIIADRD----DGEVFDEAPTYLDNNNHPIISRHYTGEERQKFSGDYITGEQFFQFYTQNKTRVLSNCRALDSRTILLSTAKIFPIYPPASETQLTAFVNSSFYAA------- |
5 | 3eh1A | 0.09 | 0.06 | 2.29 | 0.71 | CNFpred | | SDLASLACMSKYSA-NPSQAEKLQKDLKRYLTR--------------IGFEAVMRIRCTKSMHTFHGNFFVR-STDLLSLANINP--DAGFAVQLSIEE----------SLTDTSLVCFQTALLYTS-------------KGERRIRVH-------------TLCLPVVSSLADVYA----------GVDVQAAICLLANMA |
6 | 2m67A | 0.15 | 0.02 | 0.83 | 0.48 | HHsearch-2 | | PALAIFIGLTIYAIQRKRQADASSTPKF------------------NGVKK------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 6f9gA | 0.11 | 0.11 | 3.94 | 0.71 | Neff-PPAS | | QALRIQRYFMDAYQYGNGFARLVQVLKDRGGSDLRAELTRQARASLAGNPDVIGLYLVFQPNALDQQDSHYLGESGRFSLYWSQPSPGTLELEAMPETMLGDTSIGSNGAAKNTARTCMLEPYLDEVNGRQVLMLEHGKVVGVVGLDIGLANLQQLSVFDGQGQVSIATAAGSRDDSVLGKPMDKSVADGLLRVAHPFTPIP |
8 | 3v8hA1 | 0.17 | 0.03 | 0.98 | 0.30 | HHsearch | | ----------------------------------------------PGY--------------KVLDAQIADTSRGFRIVARFEEGGADKVLLHK----------------------------------------------------------------------------------------------------------- |
9 | 2qv8A | 0.09 | 0.06 | 2.44 | 0.60 | SP3 | | --------------------DEAKISAQSFYQR----LLLLNEEAILSGQDFGVRIDVDTRRLTFLQLTADKGWQKWQKTNQTTLKEGLQLDFELGGGAWQKDDRLFNPGSLFDE----------PAPQLFVLSSGEVTPFTLSIFPKG--------QEPDEQWRVTAQENGTLRLLAPGESD------------------- |
10 | 3licA | 0.08 | 0.07 | 2.98 | 0.71 | PROSPECTOR2 | | ESSHSASRLQFL-LEHAQANTQGLSDFIGLLADKDDINNPEKLKTVLT----NRIQRNPDFFGSAIAFKPNTFPNKKLFSPYVYRSGSGFNYLDIGADGYDYTDGNWDSKAINQVGGYWSKAYFDEGAGNVLITGVQPDYFGVTTVDLALDRLPEQLGIAPSRLVVLIFHSDKEKVLAGWLDKQNIKNIAFATLLNWRVVVV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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