Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | NYPQAMNPPMGGGNYPVPGQAPMGQPAQQGYAAPGMGGPVGGGGGGGGAMARPFGGGGAMAGPVGGGGAGPPEFGGMPAAEGAEGEGDEDYSSSVEEETTISAKVMDNIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEEEQDAANGVRDNVLNNLNANGPGRAGFGGGFPGGGGGGGMGMAGGGGGGGGGMMGLPGMGGQVNAYNPGYRQG |
1 | 2pffA | 0.28 | 0.27 | 8.33 | 1.18 | MUSTER | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 4wj3B | 0.21 | 0.20 | 6.38 | 1.00 | HHsearch | | DLNRAGTPLLEIVSEP-----DIRSAKEVAYVKHAVYLGICD-GNMAGSLRCDCNSVRPKGQAEFGTRAEGGKVVQETRLYDPNKEEANDYPCPDLLPVVIEPEYLAKLREQLPELQYGLSAYSASAWVMVELGSLLNKDGEIEQSPVSAEQLGGMILRIKDNT--ISGKLAKMVFEAMANGEGSAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGG- |
3 | 5gaoE | 0.10 | 0.10 | 3.71 | 1.31 | PROSPECTOR2 | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTNKK |
4 | 5yfpA | 0.04 | 0.04 | 1.96 | 0.87 | SPARKS-K | | KISQLQGIDTNDEKMNELSLSQLLNEWDTFRKERKTNDINPVFKNSFSLLTECLCIVYQNFVEVFFHISSKHNFEEYIKHFNDPDAPPILLDTVKVMQSD--REAAVIETQLVSRIFQPIVTR----------LSSYFVELVKAEPTVAP-ALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEILPGILDLKNSEDLFQFAKRSMDIKDTDEG |
5 | 6hqaA | 0.29 | 0.15 | 4.46 | 0.56 | FFAS-3D | | -------------------------------------------------------------------------------------------AADVSYHTCISDTILNEKVRLGSEGLINF--------RFPELLQFTQEGFRGLLLLGNKSILHYFFSTAKLELSALFKRGLIDHFLEAVGVAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------------ |
6 | 1vt4I3 | 0.23 | 0.11 | 3.55 | 0.43 | HHpred | | ------------------------------------------------------------------------VFLDFRFLEQK-IRHDSTA-WNASGSILNTLQQ---LK----FYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGG------------------------------------ |
7 | 2pffB | 0.27 | 0.27 | 8.34 | 1.13 | MUSTER | | DDDYGFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
8 | 5nd1B | 0.13 | 0.04 | 1.45 | 0.47 | CNFpred | | -----------------------------------------------------------------------------------------------------NEPAFREVWNVA-NSSSDLQMIDRDKLNGEHFLRQLAQQITVNCTGTAMAIYQAVLAGPTG-----TDGDTTRLQKDLYHHLF------------------------------------------------------- |
9 | 1vt4I3 | 0.30 | 0.19 | 5.84 | 0.72 | HHsearch-2 | | ------------------------------------------------------------------------EYA-LHRSIVDHYFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFMVFL---DFRFLEQKIRHDSTAWNASNDPKYERLVNAALMAEDEAIFEEAHKQVQ---------RGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
10 | 1vt4I4 | 0.42 | 0.25 | 7.26 | 0.98 | Neff-PPAS | | --GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------------------------------------------------------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|