>PF01972 (279 residues) TYSDPMASLSGLFWILLFLYLIFAPQLKHQQLLAARRRAMRRIGMKRGSNVITMIHRQES IGFLGIPIYRFIDIDDSEKVLRAIRSTPKDKPIDLIIHTPGGLVLAATQIAKALHDHPAK TTVIVPHYAMSGGTLIALAADEILIDPHAVLGPVDPQLMNYPAPSILKVVEKKEPKDIDD KTLIMADIAEKAINQVRETVFNLLKDKMDEEKAREVAKILTEGRWTHDYPLTVEELRQLG LKVSTDVPEEVYELMELYPQPMMQRHPGVEFVPSPPKGE |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TYSDPMASLSGLFWILLFLYLIFAPQLKHQQLLAARRRAMRRIGMKRGSNVITMIHRQESIGFLGIPIYRFIDIDDSEKVLRAIRSTPKDKPIDLIIHTPGGLVLAATQIAKALHDHPAKTTVIVPHYAMSGGTLIALAADEILIDPHAVLGPVDPQLMNYPAPSILKVVEKKEPKDIDDKTLIMADIAEKAINQVRETVFNLLKDKMDEEKAREVAKILTEGRWTHDYPLTVEELRQLGLKVSTDVPEEVYELMELYPQPMMQRHPGVEFVPSPPKGE | |||||||||||||||||||
1 | 1q51B1 | 0.13 | 0.09 | 3.10 | 1.14 | SPARKS-K | --------------------------------NPFDAKAWRLVDGFDDLTDITYHRHVVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASEYARFKQT---------------DADVGS-FDGG------------------YGSAYLARQVGQKFAREIFFLGRT--------YTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK-------------- | |||||||||||||
2 | 3rstA | 0.16 | 0.13 | 4.15 | 1.69 | FFAS-3D | ------------------------------------------------SSKIAVLEVSGTI-----QDNDGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK---IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK-DHKDLKNASVISY-------- | |||||||||||||
3 | 3rstA | 0.20 | 0.14 | 4.60 | 2.53 | HHpred | -----------------------------------------------PSSKIAVLEVSGTIQDND--------GYNHRTFLKNLERAKDDKTIVLKVNSPGGGVYESAEIHKKLEEIKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIME---SVNYSKLADKLGISDIMSPSREMTKEEKNIMQSMEGFVDVISGRGMPKAEVKKIAD----GRV-----YDGRQAKKLNLVDELGFYDDTITAMKKDHDLKN--ASVISYE------- | |||||||||||||
4 | 3rstA | 0.17 | 0.13 | 4.35 | 1.25 | MUSTER | -----------------------------------------------PSSKIAVLEVSGTIQDNDGY-----NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRPKAEVKKIADGRV-----YDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKN----ASVISYE---- | |||||||||||||
5 | 3p5mA | 0.16 | 0.10 | 3.32 | 1.20 | CNFpred | ---------------------------------------------------ISVEHDVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDG----------------------------------GASALLPLLIGRARTSRMAMTA--------EKISAATAFEWGMISHITSADEYESVLTDVLRSVSG--------------- | |||||||||||||
6 | 3bezD | 0.16 | 0.14 | 4.76 | 0.55 | HHsearch-2 | PFSPADSRWIGELWQN-YLNTVANRQDTAKYAAEIEKALTKEFGPADTGDSIGVVFANGAI-DGEET-QGNVGGDT---TAAQIRDARLDPKVKLRVNSPGGSVTASEVIRAELAAAGKPVVVSGG--AASGGYWISTPANYIVANPSTLTGSIGI-FGVI--TTVENSLDSIGVHDV-SITRALPPEAQ-LQLSYKRFITLVAARHSTPEQIDKI---------AQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVK-Q--WHLEYYV------ | |||||||||||||
7 | 3rstA | 0.17 | 0.13 | 4.34 | 1.46 | Neff-PPAS | -----------------------------------------------PSSKIAVLEVSGTIQDN-----DGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGKAEVKKIADGRYDGRQAKKLNLVDELG--FYDDTITAMKKDHKDLKNASVISYE------------ | |||||||||||||
8 | 4fzwA1 | 0.14 | 0.09 | 3.05 | 0.85 | HHsearch | ----------------------------------------SEL-IVSRQQRVLL------LTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARLNERPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGG----------------------------------TQRLIRSVGKSLASKMV--------LSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMAR-H------------- | |||||||||||||
9 | 3rstA | 0.17 | 0.13 | 4.13 | 1.58 | PROSPECTOR2 | -----------------------------------------------PSSKIAVLE------VSGTIQDNDGY--NHRTFLKNLERAKDDKTVKGIVNSPGGGVYESAEIHKKLEEIKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISAHADIMSPSREMTKEEKNIMQSMVDNSYEGFGRGMPKAEVKKI---------ADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKN--------ASVISYE | |||||||||||||
10 | 2np9A | 0.15 | 0.09 | 2.90 | 2.47 | SAM | ----------------------------------------------------------ARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGGRVFSA-KLVRGSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-----------------------------------NLRLGRFAGPRVSRQVI--------LEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD---------------- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |