Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | VLCFTVAVAMGVVVVLQDPTVGEQLIETIGREIVSQIMDDSPWIVAGKIFINNIQVSLILFAGGATFGVLTCVLLVSNGLVVGGVIELVRQQHGLLYAAAAILPHGIFELPAILTAGALGIRLGELLWRELQGSGDAAAGAIVLARIFCTVIIPVLAVAACVEAFITP |
1 | 5t4oK | 0.09 | 0.09 | 3.40 | 1.03 | SPARKS-K | | VVLGLLFLVLFRSVAKKATSGIELVIGFVNGSVKDMYHGKSKLI--APLALTIFVWVFLMNLMDLLPIDLVTLSMALGVFILILFYSIKMKGIGGFTKLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIV |
2 | 4q65A2 | 0.12 | 0.11 | 3.96 | 1.18 | FFAS-3D | | VTLTFFSMLFWAFA---------QQGGSSISLYIDRFVNTVPTAMFQSI--NAFAVMLCGFALGLGLMSAGFCILTLSAGLAVMGFAELFIDPVAMSQITRIEVTGVLTGIYMLLSGAIANYLAGVIADQTSS----INAYIEVFDQITWGALACVGVVLMIWLYQA- |
3 | 5xu1M2 | 0.13 | 0.13 | 4.54 | 1.07 | Neff-PPAS | | SLLTMIGIIIGVSSVVVIMALGDSLSRQVNKDMTKSQDESVVFAEIQQSFSFMTTIISSIAGISLFVGGTGVMNIMLVSVTERTREIGLRKATRANILIQFLIESMILTLLGGLIGLTIASGLTALAGLLLQGVGVSIPVALFSLAVSASVGMIFGVLPANKASKLDP |
4 | 6fv6A1 | 0.09 | 0.09 | 3.38 | 1.00 | SPARKS-K | | TVENMISMILAVAATGFSLSLLWFISYSGTNILIAQFVKKDPSPILINGLFLSFLISLPLFFYGKDFVLFLFWFIPIGFLTNTFYGAYNGAGDTIIMNLTHIGTAYTLIVEGAGWGIAISEILAFFIYTFLLIFFLEPKLLFKMVRLGTPTALERAITTLSFN----- |
5 | 1pw4A2 | 0.08 | 0.08 | 3.04 | 1.13 | FFAS-3D | | --LWYIAIANVFVY------LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIAAGFTFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGLLQELVP |
6 | 5y50A1 | 0.14 | 0.09 | 3.05 | 0.19 | HHpred | | ---------------------------------------------FLRETKKLSYIAGAMIAVNSSMYVL----QVISIMMVGH--------LGELFLSSTAIAVSFCSVTGFSVVFGLASALETLCGQANGAK-Q-YEKLGVHTYTGILVCIPLSLLWTYIGDIL-- |
7 | 5xu1M2 | 0.14 | 0.14 | 4.85 | 1.00 | MUSTER | | SLLTMIGIIIGVSSVVVIMALGDSLSRQVNKDMTKSQDESVVFAEIQQSFSFMTTIISSIAGISLFVGGTGVMNIMLVSVTERTREIGLRKA-TRANILIQFLIESILTLLGGLIGLTIASGLTALAGLLLQGLIEGIEVGIPVALFSLAVSASVGMIFGVLPANKDP |
8 | 3rkoB | 0.15 | 0.13 | 4.40 | 1.00 | CNFpred | | LMWATLMLLGGAVGKSAQLPLQTWLADAMA-----------GPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLL------AGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAW------DAAIFHLMTHAFFKALLFLASGSVILACHHE |
9 | 5w63A | 0.17 | 0.14 | 4.52 | 0.82 | HHsearch-2 | | ----------------TSNDQILLLKDFIYERV-HRHTVSDPHKKIGDELDNNVD--LQRMLADSTKEFVKVREIFSDGFNWGRVVALFYFASRLIEALLTKIPDIIRTIINW-----TLDYLREHVINWIQGGWEGQTYFGTTWKTV-GVFLAGVLTTVLV----M- |
10 | 5nikJ3 | 0.14 | 0.14 | 4.70 | 1.06 | Neff-PPAS | | TLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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