>PF01733 (312 residues) MIKIVLINSFGAILQASLFGLAGVLPANYTAPIMSGQGLAGFFTSVAMICAVASGSKLSE SAFGYFITACAVVILAILCYLALPWMEFYRHYLQLNLAGPAEQETKLDLISEGEEPRGGR EESGVPGPNSLPANRNQSIKAILKSIWVLALSVCFIFTVTIGLFPAVTAEVESSIAGTSP WKNCYFIPVACFLNFNVFDWLGRSLTAICMWPGQDSRWLPVLVACRVVFIPLLMLCNVKQ HHYLPSLFKHDVWFITFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGNIMSFFLCLGL ALGAVLSFLLRA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MIKIVLINSFGAILQASLFGLAGVLPANYTAPIMSGQGLAGFFTSVAMICAVASGSKLSESAFGYFITACAVVILAILCYLALPWMEFYRHYLQLNLAGPAEQETKLDLISEGEEPRGGREESGVPGPNSLPANRNQSIKAILKSIWVLALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKNCYFIPVACFLNFNVFDWLGRSLTAICMWPGQDSRWLPVLVACRVVFIPLLMLCNVKQHHYLPSLFKHDVWFITFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGNIMSFFLCLGLALGAVLSFLLRA | |||||||||||||||||||
1 | 6ei3A | 0.11 | 0.11 | 4.01 | 1.41 | SPARKS-K | FVGLGLIAFGAGGIKPLVASFMVDFDKVVFDAFYWIINFGSLFASLLIPLALKHLG-----PSWAFGIPGILMFIATAVFWLGRKRAVVRSALLAHAPGQGRPGLALAAISVLLALACLGLTEQLGLRGTHPDAAVDGVRALLRVLVIFALVTPFFSLFDQKASTWVLQGREMRMPAW--FTASQMQALNPLLVMLLIPFNNLVLYPLLRRLGWEPTSLRRMTSGIAFSGVAWIAVGAIQVAMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRN | |||||||||||||
2 | 1pv6A | 0.07 | 0.07 | 2.72 | 1.19 | FFAS-3D | ------FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFLGLRKYLLWIITGMLVMFAPFFILVGSIVGGIPAVEAFIEKVSRRSNFEFGRARMFGCAKTDAPSSATVANAVGANHSAFSLKLALELFRFLSLYVIGVSCTYDVFDQQFANFFTSF------FATGEQGTRVFGYVTTMGELLNAAPLIINRI------GGKNALLLAGT-IMSVRIIGS----------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATILVCFCFFKQLAMIFMSVLAGNM-- | |||||||||||||
3 | 4cl4A | 0.10 | 0.10 | 3.54 | 1.30 | MUSTER | YLALYLTALGTGGVKASVSGFGSQFDTYFFNRFFFCINVGSLLAVTVLVYVQDDV-----GRKWGYGICAFAIVLALSVFLAGTN------------RYRFKKLIGSPMTQVAAVIVAAWRNRKLETLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEK | |||||||||||||
4 | 3rkoB | 0.08 | 0.07 | 2.65 | 1.43 | CNFpred | NLVLDGLSLTMLSVVTGVGFLIHMYASWYMREEGYSRFFAYTNLFIASMVVLVLA-----DNLLLMYLGWEGVGLCSYLLIGFYNGAAAMKAFVVTRVGDVFLAFALFILYNE---------------------GTLNFREMV-MLMWATLMLLGGAVGKSAQLPLQTWLADAMA-----GPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ------------TDIKRVLAYSTMSQIGYMFLALGVQAW--------DAAIFHLMTHAFFKALLFLASGSVILAC | |||||||||||||
5 | 3o7pA | 0.09 | 0.08 | 3.10 | 1.40 | Neff-PPAS | GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLMLTKFPALQSDNHSDAKQGSFSASLSRLARHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-----AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNL-GQDTKYGSSFIVMTIIGGGIVTPVMGFVSDA | |||||||||||||
6 | 6ei3A | 0.10 | 0.10 | 3.77 | 1.24 | PROSPECTOR2 | PRQIPFIIGNEACERFSFYGMRNILGAPERDAEAKAFGAGGIKPLVASFMVDQFDQSNKHRDAFYFGIPGILMFIATAVFWLGRKFGAVVRSALLAHAPGQGRPGLALAAISVLLALACLGLTEQLGLERARGTHPDAAVDGVRALLRVLFALVTPFFSLFDQKASTWVLQGREMRMPAWFTASQMQALNPLLVMLLIPFNNLVLYPLLRRLGWEPTSLRRMTSGIAFSGVAWIAVGAIQVAMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRQ | |||||||||||||
7 | 6h7dA | 0.10 | 0.10 | 3.54 | 1.36 | SPARKS-K | IIGRLLLGVGVGFANQSTPVYLSEMPAKIRGALNIGFQMAITIGILVANLINYGTSKMQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGK-------NEEAKQMLKKIRGADNVDHEEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGD----DAALMSAVITGVVNMLSTFVSIYAVD------RYGRRLLFLEGGIQMFICQLLVGSFIGARFGTPATADWILAFICVYVAGFAWSW-GPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLC | |||||||||||||
8 | 3o7pA | 0.10 | 0.09 | 3.43 | 1.14 | FFAS-3D | ---GIITGLFLYALGAALFWPAANYTLFLVGLFIIAAGLGCLETAANPFVTVLG--PESSGHFRLNLAQTFASFGAIIAVVFGQSLAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-----GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-------------AGGHVGLIALTLCSAFMSIQYPTIFSLGIKNL-GQDTKYGSSFIVMTIIGGGIVTPVMGFVSDA | |||||||||||||
9 | 4pypA | 0.07 | 0.07 | 2.77 | 1.28 | MUSTER | ILGRFIIGVYCGLTTGFVPMYVGEV-GALGTLHQLGIVVGILIAQVFGLDSIMGNKD---LWPLLLSIIFIPALLQCIVLPFCPES--PRFLLINRNEENRAKSVLKKLRGTADVTHDLQEKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAG-VQQPVYATIGSGIVNTAFTVVSLFVVQRAG----RRTLHLIGLAGMAGCAILMTIALALLEQLPWM----SYLSIVAIFGFVAFFEVPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQ | |||||||||||||
10 | 4he8G | 0.10 | 0.08 | 2.99 | 1.39 | CNFpred | VYWAFGLDGLSALFFLTIALTVF------LGALVARVFLGLALLMEGLLLGLFAA----RDLLVFYVFFEAALIPALLMLYLYGRTRALYTFVLFTLVGSLPMLAAVLGAR--------LLSGSPTF----------LLEDLL-AAFWVFLGFALAFAIKTPLFPLWLPPFHQE---NHPSGLADALGTLYVGVFAFFRFAIPLAPEGFAQA---QGLLLFLAALSALYGAWVAFA------------AKDFKTLLAYAGLSHMGVAALGVFSGTP------EGAMGGLYLLAASGVYTGGLFLLAGRLYER | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |