Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | QPPRYAPSAPMPSSMPTVALEILDKAMSNTTGATQTQKAEKAAFASYAEAFRDDVRLRQIKRHVNEQILPKLKSDLSELKKKRAIIHTTLLVAAVVALLTSVCTLSSDMSVAFKINGTKTEVPSWFKSLNPMLGVVNLGATFLMMVCAKSERALNQQIDMIKKEVMKKQSYNDAVRMSFTEFSSIPLDGFEMP |
1 | 5cwcA | 0.09 | 0.08 | 3.15 | 0.87 | SPARKS-K | | ---------SEKEELRERLVKICVENAKKGDDTEEAREAAREAFELVREAAERSSEVLELAIRLIKECVENAQREYDISEACRAAAEAFKRVAEAAKRAELAIRLIKECVENAQREGYD--ISEACRAAAEAFKRVAEAAKRAGITLKRAIEEIRKRVEEAQREI--SEACRQAAEEFRKKAEELKRR----- |
2 | 5nenA1 | 0.09 | 0.07 | 2.60 | 1.07 | FFAS-3D | | -----------------ATEGRLLAERDGLSIVTEIIALQTQLFASRRQALQSEIDGYKQSMDGIRFQLKGLQDSRGNKQIQLSSLREQMNSMKQLAAYLEVQRQFAEVN---------SSIDETVGRIGQLQKQLLESQQRIDQRFADYQREVRTQLAQTQMDASEFRNKLQMAD----------------- |
3 | 5ztyA1 | 0.13 | 0.08 | 2.70 | 0.26 | HHpred | | ----------------------------------------PNDYLLSWLLFIAFLF--SGIIYTYGHVLWKAHQHVARMRLDVELAKTLGLVLAVLLICWFPVLALMAHSLATT----LSDQVKKAFAFCSMLCLINSMVNPVIYALEEIRSSAHHCLAHWKK------------------------------ |
4 | 3m1iC | 0.08 | 0.08 | 3.05 | 0.67 | MUSTER | | KCKYHFVIQQPRESEPFIQIRDIQKTTADLQ--PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF-YPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKT--PKVRGLRTIKKEILKLVETYISK----ARNLDDVVKVL-VE |
5 | 1h2vC | 0.08 | 0.06 | 2.30 | 0.72 | CNFpred | | ----------------SKILRLLCTVARLLP-------EKLTIYTTLVGLLNAR--NYNFGGEFVEAMIRQLKESLNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQE-------VPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRQKTHVPMLQVW--------------- |
6 | 2kogA | 0.12 | 0.06 | 2.01 | 0.41 | HHsearch-2 | | ---MSATAATVPPAAPAGEGG-PPAPPPNLTSNR-RLQQTQ-------------AQVDEVVDIMRVNVLSQFETSAAKLKRKYWWKNLKMILGVICAIILIII-IVYFS--T--------------------------------------------------------------------------------- |
7 | 5cwqA | 0.09 | 0.09 | 3.51 | 0.82 | Neff-PPAS | | --ERESEEAERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARVACERGAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNSEEAERAEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQL |
8 | 6d6tB | 0.12 | 0.11 | 3.83 | 0.43 | HHsearch | | TMCPFGSYAY---TRAEVVYEWAEDGSRGQTVDSGIVQSS---TGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQV--SFWLEVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFI-AVCYAFVFSALIEFATVNYFTKSQPARAAKIDRLSRIAF-PLLFGIFNLVYWATYL---------- |
9 | 3o6xA | 0.11 | 0.10 | 3.76 | 0.68 | SP3 | | DKD------EAIFRILKENIIASELIRFEGDGYSEEWKQEAARRGHVPEALMDNQSRAVLNETELACRLEVELEKYTMKVQIESRVLGDLAINHIVPIAVSYQNRLLENLCRMKEIFSEEEYEVMSADRKELIKEISHRVSAIKVLVRDMTEARKVANHK-ENFKEKAFAYEETVRPYLESIMEIDDEIWPLP |
10 | 5nnvA | 0.09 | 0.09 | 3.37 | 0.82 | PROSPECTOR2 | | AKEEELAES-SAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKELKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALTSGEEKLEEAAKHKLNDKTKTIELIAKEKRLYKQKTTLL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|