>PF01594 (331 residues) LILFIWRQMGSIFNPFFSVAKTFFLPFLLGGFLYYITNPIVTFLENRFKIKRIWGITLIF AVLLSLLVFSITSLIPNLINQLTDLISASQNIYVGLQDLFNEWKSNPAFKNIDIPVLLKQ FNLSYVDILTNVLDSVTVSVSSIVYMITNTVMILVLTPVILFYLLKDKDGLMPMLDRTIL KNDRHNISQLLNQMNKTISRYISGVAIDAAFIFVFALIGYQIMGVQYAFLFALVAGITNV IPYVGPYLGLTPVVLAYVVSDPKKMIIAIIYIMILQQIDGNIVYPRVVGSTMKIHPLTIM VLLVLGGNIAGLVGMLVAVPAYAIIKEIVKF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LILFIWRQMGSIFNPFFSVAKTFFLPFLLGGFLYYITNPIVTFLENRFKIKRIWGITLIFAVLLSLLVFSITSLIPNLINQLTDLISASQNIYVGLQDLFNEWKSNPAFKNIDIPVLLKQFNLSYVDILTNVLDSVTVSVSSIVYMITNTVMILVLTPVILFYLLKDKDGLMPMLDRTILKNDRHNISQLLNQMNKTISRYISGVAIDAAFIFVFALIGYQIMGVQYAFLFALVAGITNVIPYVGPYLGLTPVVLAYVVSDPKKMIIAIIYIMILQQIDGNIVYPRVVGSTMKIHPLTIMVLLVLGGNIAGLVGMLVAVPAYAIIKEIVKF | |||||||||||||||||||
1 | 5uj9A3 | 0.08 | 0.08 | 3.19 | 1.01 | SPARKS-K | VKLSVYWDYMKAIGL--FISFLSIFLFLCNHVASLVSNYWLSLWTDDPIVGTQEHTQVRLSVYGALGISQGITVFGYSMAVSIGGIFASRRLHLDLLHNVLRSP-ISFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLALGLIYFFVQRFYVASSRQLKRLERSPVYSHFNETLLGV-SVIRAFSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAVISRHVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQDMAPPKDWPQVGRVEFRDYGLRYREDLDLVLKHI | |||||||||||||
2 | 6idpA | 0.09 | 0.08 | 3.22 | 1.49 | FFAS-3D | -------------SSLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLG-VLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLETVFAIIDHYWLWWLASAWTGAMLYFYYGTLMMVTSVLNLILDPIFIIDGAAIATIIAFGVGSQSLTALGHIMGPAMLSQLLPPLSSMFATKLLAAAWALGSRFEFFALVAVLAMTMSLPPMIGRLGAGFQLLIALVTYVFATPLAELMISLGALGICMLMVSVAN------ALGKSYVALTISALLGAHFYGIEGLFIGALVGNIIAGWA-- | |||||||||||||
3 | 3rkoB | 0.09 | 0.08 | 3.23 | 1.31 | CNFpred | LSLTMLSVVTGVGFLIHMYASWYMREEGYSRFFAYTNLFIASMVVLVL-----ADNLLLMYLGWEGVGLCSYLLIGFNGAAAMKAFVVTRVGDVFLAFALFILYNE--LGTLNFREMVELAPAHFNNMLMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAATMVTAGVYLIA----------RTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ-TDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLTAGFFSKDEILAGAMAN | |||||||||||||
4 | 5tj5A | 0.14 | 0.12 | 4.00 | 1.31 | HHsearch-2 | AGLPTIVTF-PFMFAIMF-GHG-----FLMTLAALSLVLNEKKINKM-KRGEIFDMAFTGRYIILLMGVFSMY-TGFLYNGTENALLFSNSYKMKLSSLANHLDIGNFIPGLPAPGLLNMLINM---FLSPGTI--DDELYPH-QAKV-QVFLLLMALVCIPWLLLVKPLHFKF--DIMIHQVIHTI-EFCLNCVSHTASYLRLWALSLA-HAQLSS-VLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLV-LMEG----TSAMLHSLRLHWVES-------MSK--PYEPFA--------------------------FEYKDME | |||||||||||||
5 | 6idpA | 0.11 | 0.11 | 3.94 | 1.13 | Neff-PPAS | DSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGAMNTLLPGTLMMVTSVLNLILDPIFIFTFDLGIDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLPPLSSMFATKLLASFGTAAVAAWAFEFFALVAVLAMTMSLPPMIGRMLGAITHIRQLVRIILNLHLVIVPISLGALGICMLMVSVANALGKSYVAFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWAAW | |||||||||||||
6 | 3gi8C | 0.09 | 0.08 | 3.24 | 1.22 | PROSPECTOR2 | AVSMAVGIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSDNIITGALSILLWMSYVISIALFAKGFAGFNIAITEIGISKAVGRAEFFIVLVIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENA-----------LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGG--ANVAYSLAKDGELKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILI-DEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIKS | |||||||||||||
7 | 3mktA | 0.10 | 0.10 | 3.55 | 1.48 | FFAS-3D | ------------YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRMVIGFIGLLLNIPLNWIFVWIMLLLLLFQPKELIRLFRLGFPVAAALFFEVTLFAVVAVVAAHQVALNFSSLVFMFPMSIGAAV-----SIRVGHKLGAANVGLMTGLATACITALLTVLFREQIAFAAIYQCMDAVQVVAAGSLRGIFHRTFISYWVLGLPTGYILGMTNLGAKGFWLGFIIGLSAAALM-- | |||||||||||||
8 | 4he8F | 0.10 | 0.09 | 3.39 | 1.25 | CNFpred | PFSLLLDNLSGFMLLIVTGVGFLIHVYA-SRFFAYFNLFIAMMLTLV-----LADSYPVMFIGWEGVGLASFLLIGFYADSARKAFIVNRIGDLGFMLGMAILWAL--YGTLSISELKEAMEGPLPDLLALAGLLLFLGAVGKSAQLMVWLPDAMAGPTPVSALIHAATMVTAGVYLIA----------RSSFLYSVLPDVSYAIAVVGLLTAAYGALSAFGQ-TDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALGGEQDVRKMGGLWKHLPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTY | |||||||||||||
9 | 1pv6A | 0.06 | 0.05 | 2.45 | 1.07 | Neff-PPAS | FAPFFIFIFGPLLQYLVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT-TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF----EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ | |||||||||||||
10 | 1pv6A | 0.10 | 0.09 | 3.50 | 1.20 | PROSPECTOR2 | MY----------YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFLLWIITGMLVMFAPFFIFIFGPLLQNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFTRVFGYVTTMGELALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFCFFKQLAMIFMSVLAGNMYGFQGAYLVLGLVALGFTLIVA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |