Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VGIDIAKNKHDVTALNVPGKTVLKPLTFSNNKAGFELLDLSLRQLNQDCLIALEDTGHYAFNLLNFLHEQGYKVYTYTPLLIKEFAKSLSLRKTKTDKKDAHGIALKLLSDPNREQFQHDNRQVELKILARHIHRLKRKQSDWKVQYTRCLDIIFP |
1 | 3bzkA3 | 0.12 | 0.10 | 3.39 | 0.74 | SPARKS-K | | LGLDPGLTGVKVAVVDATGK-LLDTATVNQWDQTLAVLAALCAKHQVELIAIGNGTASETDKLAGELIKKKLTKIMVSEAGASVYSLAAKEFPELDSLRGAVSIARRLQDPLAELVKIEPKSIGV------------------------------- |
2 | 4ep4A | 0.20 | 0.15 | 4.72 | 0.91 | FFAS-3D | | AGIDPGITHLGLGVVAVEGKRLLHGEVVKTSGRIHARVLEVLHRFRPE-AVAVEEQGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAARPSHLADALAIAFYARMGTAKPL---------------------------------------- |
3 | 3bzkA3 | 0.14 | 0.11 | 3.71 | 0.46 | HHpred | | LGLDPGRTGVKVAVVDATGKLL-DTATVYHQDQTLAVLAALCAKHQ-VELIAIGNGTRETDKLAGELKKMKLTKIMVSEAGASVYSASEEFPELDVSLRGAVSIARRLQDPLAELVKIEPK----------------------------------- |
4 | 6nqmA | 0.14 | 0.14 | 4.79 | 0.66 | MUSTER | | VNMELAKIKQKCPLYEANGQAVPKEK-DEMVEQEFNRLLEATSYLSHQLDFNVLNNVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELL-NKMVNLKEKIKELHQQTAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPS |
5 | 3bzcA | 0.17 | 0.15 | 4.87 | 0.64 | CNFpred | | LGLDPGLTGVKVAVVDATGKLLDTATVYPQWDQTLAVLAALCAKH-QVELIAIGNGSRETDKLAGELIK-KLTKIMVSEAGASVYSASELAAKE-VSLRGAVSIARRLQ--------------DPLAELVKIEKSIGVQHDVSQLKLARSLDAVVE |
6 | 4ep4A | 0.15 | 0.13 | 4.33 | 0.78 | HHsearch-2 | | AGIDPGITHLGLGVVAVEGKRLLHGEVVKTSPEIHARVLEVLHRF-RPEAVAVEEQFFELLGAVVAAFEAGVPVYAYGPMQVKQALAGH----GHAAKEEVALMVRG--ILGLK-EAPRPSHLADAL--AIA----------LTHAFYARMGTAKP |
7 | 4ep4A | 0.21 | 0.16 | 5.09 | 0.59 | Neff-PPAS | | AGIDPGITHLGLGVVAVEGKGALKARLLHGEGRIHARVLEVLHRFRPE-AVAVEEVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGEAPRPSHLADALAIALTHAFYARMGTAKPL------------------------------------ |
8 | 4ep4A | 0.17 | 0.15 | 4.84 | 0.75 | HHsearch | | AGIDPGITHLGLGVVAVEGKRLLHGEVVKTSKERVARVLEVLHRF-RPEAVAVEEQFNELLGAVVAAFEAGVPVYAYGPMQVKQALAGH----GHAAKEEVALMVRGI--LGLKE-APRPSHADALAIALTHAFYAR-------------MGTAK- |
9 | 5e6fA | 0.15 | 0.10 | 3.47 | 0.85 | SP3 | | CSVDIGIKNPAYTIFRYEDSSLIAIEKSDWSDNWEYNVTKDLTKYNPD-IIVLEKQGKIIYFIKGFFYNTNTSVIVRNSDRKKQSVITFMDKLSKLDIADSFNLGIAYIES--------------------------------------------- |
10 | 2l82A | 0.12 | 0.10 | 3.64 | 0.64 | PROSPECTOR2 | | MSQ--------IFVV------------FSSDPEILKEIVREIKRQGVRVVLLYSDQDKRRRERLEEFEKQGVDVRTVEDKNIREIWERYPQLDTTDDKEWIKDFIEEAKERGVEFVVYNNKDDDRRKEAQQEFRSTVSDKEELIEQVRRFVRKVHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|