Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MRSSSPSQPPSIKAQHRIAKHKAIRRRRIDLNCGCSIFYHIKCADHGFTHRGEHHCASGREFRFYLGGTKSPLFQDHAGGRSSIHTDKDIPHPNQVQSQPQESTGSPQSIPELPSLDDIDSSFWDDI |
1 | 2mpvA | 0.18 | 0.16 | 5.13 | 1.09 | SPARKS-K | | -----NFCDITITPAT-------NRDVNVDANIDLSFTIRQRCAGMRIKAWGE---ANHGQLLIKPQGGNKSAGFTLASPRFSYIPNNPANITNPGVYQLGMQGSITPAIPLRPGLYEVVLNAELVT |
2 | 3jcrV | 0.12 | 0.10 | 3.64 | 0.34 | FFAS-3D | | ----CP---------YLDTINRSVLDFDFEKLCSINAYACLVCKSHAYIHSVQHHVFNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDY--- |
3 | 2pf4E | 0.15 | 0.06 | 2.12 | 0.29 | HHpred | | ------TNCILLRMKHENRKL-YRKDPLVWVDCYC-----FDCFRMGLDL--C--EGTLLLWCDIIGQT---------------------------------------------------------- |
4 | 2oa2A | 0.12 | 0.11 | 3.86 | 0.75 | MUSTER | | VTDHGP-RPFVVNIEDETKRNRAFRRALWTGD-HLQVTLSIQ-VGEDIIHPHLLRVEEG-RGLVQGHRQDNLHFQEEVFDDYAILIPAGTTGNRPIYAPPQHPHGT--VHETKAIAAA--------- |
5 | 5uqdA | 0.17 | 0.06 | 2.07 | 0.55 | CNFpred | | ---------------LNTMRREGIRYAKLELHENDMYFLPRNV---IHQFRTVSACSSV-AWHVRL------------------------------------------------------------- |
6 | 2pffB | 0.16 | 0.15 | 4.98 | 0.74 | HHsearch-2 | | VPSPMLSSNLTQQVQD-YVNKPAGKQVEISLVNGAKNLVVSGPPQYNLTLRKAK-------APSGLDQSRIPFSERNRFLPASPHSHLLVPASDLINKDLVKNNVSFNADIQIPVYDTFDGSDLRVL |
7 | 4b03D | 0.13 | 0.13 | 4.61 | 0.95 | Neff-PPAS | | FHLTTRGGEPHMIVSKQERGKSLLTLIAMDLGELCEDTMTYKCPRITETEPDDVDCWCNATETWVTYGTCSQTGEHRRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALGHPGFTVIA |
8 | 2b5dX2 | 0.19 | 0.08 | 2.54 | 0.44 | HHsearch | | ------TNDWIYRHLHEMIERM-----------------------------------------------------------IDL--SKK--YYNS--SDPLVERVLNQMLR---ELFLAQSSDWAF- |
9 | 1chmA | 0.10 | 0.09 | 3.46 | 0.75 | SP3 | | RIRNGDKVRSTFSAQEYANRQARLRAAE-----NIDAAIFTSYHNIDFL-----YCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTDNTDWQRDNYFAAI--QQALPKAREHDHLNLQNRDKL |
10 | 2nbiA2 | 0.12 | 0.09 | 3.37 | 0.62 | PROSPECTOR2 | | QPSSQPTGPQP--------SSQPSECADVLELCP-----YDTCFLPFDDSSRPPDCTDPSV----NRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVCSPTMMPSPLPSPTE------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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