>PF01265 (310 residues) MGWFWADSQPKAPVPPHPTTPGAAIPPGCPMHESQSTPSVPAATPDKTELPSNCPMKSKD SPFYTAPKSSNPETPQPPAPQKSSTLSKLNPLNYMFASISQERAPNQTVDLGVDRELSSI PRGDSEGNWEYPSPQQMYNAMLRKGHTDTPQDAVESMVAVHNFLNEGAWNEIVGWERTFA KGLGSGWEKCRRGEENLGFELMKEELMGRVDEATEPRLIRFQGRPKELSPKAQIFQALGW AYPSKFETNPPFDRHDWFVQRHTPNGSKEVRYVIDYYSGPPEPTGEPVFYLDIRPALDSP TAAVERLMRW |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MGWFWADSQPKAPVPPHPTTPGAAIPPGCPMHESQSTPSVPAATPDKTELPSNCPMKSKDSPFYTAPKSSNPETPQPPAPQKSSTLSKLNPLNYMFASISQERAPNQTVDLGVDRELSSIPRGDSEGNWEYPSPQQMYNAMLRKGHTDTPQDAVESMVAVHNFLNEGAWNEIVGWERTFAKGLGSGWEKCRRGEENLGFELMKEELMGRVDEATEPRLIRFQGRPKELSPKAQIFQALGWAYPSKFETNPPFDRHDWFVQRHTPNGSKEVRYVIDYYSGPPEPTGEPVFYLDIRPALDSPTAAVERLMRW | |||||||||||||||||||
1 | 3j3iA | 0.10 | 0.09 | 3.43 | 0.91 | SPARKS-K | TGAFTTRWVRDSALRLTPRSRTADMVRECDFNPTMNLKALRGSGVKSRRRVSEVPLAHVFRSPPRRESLTRRVPIIDEPPAYESGRSSSPVTSSISEGTSQHEEEMGLFDVIATEARRRLGRGTL-ERIQEAALE---GQVGEVTAEKNRIEAMLSARDPQFTGREQITKMLSEREEWLELVDKTVGVKGLKEVRSIDGIR--RHLEEYGEREG---FAVVRTLLSGNSKHVRRINQLIREEASRMRRL----RADWDGDA-GSAPVNALHFVG---NSPGWKR------------WLENNNIPSDIQVA | |||||||||||||
2 | 5mqfT | 0.10 | 0.09 | 3.23 | 0.55 | FFAS-3D | ------IVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLIYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEDFEECAHKLLKMEFPESQTKELCNMIKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQETLQPFFEGLLPRDN------------PRNTRFAINFFT------------------SIGLGGLTDELRE- | |||||||||||||
3 | 1wxpA | 0.16 | 0.04 | 1.39 | 0.23 | HHpred | -----------------------------------------------------------------------------------------------------------------SGSSGPDVRRD-----KPVTGEQIEVFANKLGWKEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATP---------ENLINALNKSGLS------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3iz3D | 0.14 | 0.11 | 3.88 | 0.77 | MUSTER | TGGY---TTLEQFAFTIRNDGTNATPTQ--LQLLSYEATENELVKKTIPTPETHLPSARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSAL-------ALPNTSARLGLD-------------GVIYNS--------ETINIPFYDPAAVANFAATYAKL-----------NASTPRYRADMIDIY----AHVGLELAGTDA-ERAAGVMPVKRAKFDSWEGSLISLSRDVVILAFLIDLCSRNRDVFRMMLFIMSTAVAANTKRVDRVLEYIGVNSMRTAGATITYDSRHEF--AKFLQLTFTRW | |||||||||||||
5 | 3gdeA | 0.15 | 0.05 | 1.86 | 0.71 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------------EGIMRDAIARA--FRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPV------------------------RMMLAQVAE-----SLESAVREMR-----------------TAAVEWK----FDGSRVQVHWDG--------SRVTIYSRRLENVLPDIVEEIKKS | |||||||||||||
6 | 2pffB | 0.14 | 0.13 | 4.29 | 0.41 | HHsearch-2 | MDAYAADDEPTTPAEGKFLVSSLVEPSNCYLEGNDIHALADTKNYITARIMAKRPFDKKSNSAFRAVGEGNAQLNFEELDAEKVFTQGLNILEWLEN-PSNT--PD-------KDYLLSIPISCPAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESVLFFIGVRCY---EAYPNTSLPPSILEDSLENNE------GVPSPMLS-ISNLTQ--EQVQDYVNKTN----SHLPAGKQVEISNLVVSGPPQSGLDQSR--IPFSERKLKFVASPFHSHLLVPASD---LINKDLVKN | |||||||||||||
7 | 1maeH | 0.10 | 0.09 | 3.26 | 0.95 | Neff-PPAS | -RRSYINLPAHHSAIILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAGLVVQGGSSDDQLLS--SPTCYHIHPGAPSTFYLLCAQG-------------------------GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQDGIYLLTSEQSAWAAKEVTSVTGLVGQTSSLGHDVDAISVAQDLYALSAGTEVLHIY | |||||||||||||
8 | 1jraA | 0.11 | 0.04 | 1.28 | 0.46 | HHsearch | -----------------------------------------------------DDKVKKERASWK---YFHT--------LL---------A-RFPDEP----TPEER--EKLHTFIGLY-------AELYPCGSYHFVKLIEKYPVQSRTAAAMWGCHIHNKVNEYLKKDIYDCATILED-----Y----------------------DCGCS------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 6fmlG | 0.08 | 0.07 | 2.89 | 0.84 | SP3 | CGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTP----------VHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAP----------DHDKQRF---------TNITVPSMARFVT-------DSLAKLDELLREL | |||||||||||||
10 | 5zakA1 | 0.06 | 0.06 | 2.65 | 1.13 | PROSPECTOR2 | IRGDFSRNGKRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQLKNGYLSLSDINLDHPYREIMKLCENCPSCPLNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYEREEALNFINDCNISRDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKIKLLEILRKYKPFTNILGKQDPELAYISRNKQMEAEFRCNLVV-RFDLPTEAPISNYIMLADTDKIKSFEEDLKTYKAV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |