>PF00872 (371 residues) LHALAEENLAAASPDLLRAMIKTFADALMSAEADALCNAEYGQVSDERVNHRNGYRPREW DTRAGTVELAVPKLRQGSYFPHWLLERRRRAEQALISVVATAYLLGVSTRRVEKLAESLG VTQLSKSQVSAMAKHLDEQVAAFRNRPLDAGPYSFVWVDALTQKVREGGRIVNVHALIAV GVNADGHREILGLDVATAEDGAGWLAFLRSLIARGLSGVQLVISDAHAGLVDAIGAVLPG ASWQRCRTHYARNLLSQVPKSAQPWVATLLRTVFEQPDTDAVQAQMTHVLDALEAKFPKA AAHLDAAQHDLLAFTAFPREIWRQIWSNNPQERLNKEIRRRTDVVGIFPDRTAVIRLVGA VLAEQNDEWTD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LHALAEENLAAASPDLLRAMIKTFADALMSAEADALCNAEYGQVSDERVNHRNGYRPREWDTRAGTVELAVPKLRQGSYFPHWLLERRRRAEQALISVVATAYLLGVSTRRVEKLAESLGVTQLSKSQVSAMAKHLDEQVAAFRNRPLDAGPYSFVWVDALTQKVREGGRIVNVHALIAVGVNADGHREILGLDVATAEDGAGWLAFLRSLIARGLSGVQLVISDAHAGLVDAIGAVLPGASWQRCRTHYARNLLSQVPKSAQPWVATLLRTVFEQPDTDAVQAQMTHVLDALEAKFPKAAAHLDAAQHDLLAFTAFPREIWRQIWSNNPQERLNKEIRRRTDVVGIFPDRTAVIRLVGAVLAEQNDEWTD | |||||||||||||||||||
1 | 4fyeA | 0.11 | 0.11 | 3.88 | 0.65 | SPARKS-K | DFLEQLAKVEGSLQQFTQAVAKASLDKEGHNIRSHNPNSKEGEEPCGRYTKRNSSMARMIAGSDGTVTIHHDSFSPGARMPYSDFDDYKKLAIKAVTLINQEEVIQLAQRQIDRMTNEDLWNKIPEKARAQLIKLYVEHN---------PLSVTECYTQVVTAGQRVAAENDGSKAKITIQTGSNTEQARMSSWGVNDNSNQMTDDVIRNLDKVDYDKAGALVSDLNGAYREALFSYFGEGKW---LDQLKNQVDGYEKKKQESAIYELHNQIDALEHKGQINKALQELKEQISPVIPETKSRLQHFYNSCAYLTQAQELYYENTWHNNKLQTLMASLSCELDYAGSKSNNDRGQRLAQKIVGNALWTAMS | |||||||||||||
2 | 2bw3A | 0.10 | 0.08 | 2.81 | 1.08 | FFAS-3D | -----------------------------------------------------------------------HQSRELKTVSA---DCKKEAIEKCAQWVVRSAVSGSGFIDIKFFIKVKYGEHVSPITLSRKVTSDAKEKKALIGREIKSKDGASATID---LWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDRSTAENIYKKLKAIFSQEDLSSIKFVTDRG----ANVVKSLANNIRINCSSHLLSNVLENSFEEPILACKNIVKYFKKANLQHSILDNWESVIQILSEAGTQRIVHINKSIIQTVNILDGFERIFKELQTCCFVVPSILKVKEICSPD--VGDVADIAKLKVNIIKNVRIIWEE | |||||||||||||
3 | 4fcyA | 0.14 | 0.11 | 3.78 | 0.42 | HHpred | ---LWSK--WDNASDSQRRLAEKWLPAVQA--ADEMLNQGIS-TKTATVAGHYQVSASTLRDK-------YYQVQKAKWAAA-LV---SEFDEDAWQFLIADYLRKPAFRKCYERLELAGWSIPSRATAFRRIQQLDEAMVALM-EHL--DAMQWINGDGYLHNVFWNGDVIRPKTWFWQ--DV-KTRKILGWRCDVSENIDSIRLSFMDVVRYGI--PEHITIDNTTGGAKGLFLLM-GAKMHW----LEEYVDKLAGAQAKPD---NYGD--RAVDAELFLKTLAEGVAMFNA---------------------RTGRETEMCGGKSFDDVFEREYART---IVRKPTEEQKRMLL------------- | |||||||||||||
4 | 2qenA | 0.12 | 0.10 | 3.45 | 0.64 | MUSTER | --MLFDLRPKTRREDIFEEESRKLEESLENYPL---LGIR-------------RV--RAFLNERPGILIDCRELYAERGHITR---------EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLREVFRELNDLGEELG--------EFIVAFDEAYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS----EVGLLHDFLKILYGRIAGEVLV----DKDTSVEFLKRGFREVNLDV--ENEIEEAVELLD--IPGWLVVFGVEYLRNGD---FGRAMKRTLEVAKGLIMGELEELRRRSPRYVDIL---RAIALGYNR-------WSLIRDYLAVKGTKIPEPRLYALLENLKKM--VEEDN | |||||||||||||
5 | 1q2lA | 0.10 | 0.08 | 2.93 | 0.88 | CNFpred | --------------SARNQVMFALNDYLAGLALDQLSNQ-----------ASVGGISFSTNA-NNGLMVNANGYTQ---RLPQLFQAL-DQLEQAKSWYNQMMDSA-AFEQAIMPAQMLSQPYFSRDERRKILPSILKEVLAYRDALKSGARPEFMVIGNMTEAQ-CRNKDVVVKQSVIFEKAGSTDSALAAVFVPTGYTSSAYSSLLGQIVQPW-YAVFAFPMSVG----------RQWGMGFLLQSKQPSFLWER-----YKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGN----------MRFDSRDKIVAQIKLL--------TPQKLADFFHQAVVEPQGMAIL | |||||||||||||
6 | 1c0mC | 0.15 | 0.06 | 1.99 | 0.55 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------GVNPRGLGPLQIWQTDFTLEPRMA------PRSWLAVTVDTASSA-IVVT-QHGRVTSVAVQHHWATAIAVG--RPKAIKTDNGSCFTSKSREWLAGIAHTTG----------------------------------------------------------------------IP----GNSQGQAMVERANRLLKDRIRVLAEGDGTSKQGELLAKAMYALNHKERG | |||||||||||||
7 | 6ezvX | 0.08 | 0.07 | 2.72 | 0.70 | Neff-PPAS | KLDSAKLVAKQWIDDLGPQVSASIPSSVINFDATFQASIDAIHELYKADPTASGKDNTTVQQASQIMTALSSQVSGIEATVKGMNKELSDWGVKMQAAHDDLVNGATNIQKTIIDLQTDIES--MNNAIDNNRAAIEKLNKDLVYAQVAVGVGIFMLVAGVALTVATAGTAAAVSGGIAAVGAAGVT---------WGVLQNQIDDDYDSIAQEQKQK------AEDQQQIIALQGLSNASSAVVSAIETSTSVLSDF-ETTWTVFGNELDDVVTKLNNGASMQSIIME----KVMSDAAKNEWDDAVELAKQLASAKIAIETKELAPAV----------------------------------------- | |||||||||||||
8 | 2m8eA | 0.12 | 0.02 | 0.66 | 0.53 | HHsearch | ----------------------------------------------------------------------------------ASMGKSKEISQDLRKKIVDLHKSGSSLGAISKRLK------VPRSSVQTIVRKYKHHGT------TQ-HH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3l2rA | 0.11 | 0.08 | 3.03 | 0.89 | SP3 | ------------------------------AELDQLLQGHKGYPKQYTYFLEDG--KVKVSRPEGVKII-PP-------------------QSDRQKIVLQAHNLATGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGF--TWLYPTKAPSTSATVKSLNVLTSIAI--PKVIHSDQSSTFAEWAKER--GIHLEFST----------PYHPQSSGKVERKNSDI----KRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNT------------PFANQDTLDLTREEELSLLQEIRTSLYHPSTP | |||||||||||||
10 | 3tnfB | 0.08 | 0.06 | 2.38 | 0.96 | PROSPECTOR2 | LDEYEQAILEKKLDKLERQ--GKDLEDKYKTYEENLEGFEKLLTDSEE-------------------------------LSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQR------EHHDIKAKLANLQVLHDAHTGKKVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDA--------IKNNPAALEKAQKDYSQ----------------SKHDLAT-----------IKMEALIHKL--SLEMEKQLETINNLIMSTDPKENEEATKLLHKH------NGLNLKLANLQDMLAVHRKGEDWESIKDSPEKQKKAEHDFHKLQYETPMTEETKQQLEDNGKEKIEIANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |